Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
32 projects found  

2 accessions found for Campylobacter jejuni subsp. jejuni IA3902  

Data for CP001876  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001876.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001876_0822 CDS_832347-831058 47.2 1.9e-13 1
CP001876_0737 CDS_747037-748056 38.6 5.2e-11 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001876_0822 1/1 224 291 .. 1 87 [] 47.2 1.9e-13
CP001876_0737 1/1 131 195 .. 1 87 [] 38.6 5.2e-11

Alignments of top-scoring domains:
CP001876_0822: domain 1 of 1, from 224 to 291: score 47.2, E = 1.9e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++++sHEL++PL++I + +e+L++ ++l ++++
CP001876_0 224 QLASVISAISHELKNPLSVIDLSLEMLKD---------EKLEDKKLK 261

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+le+i r++ l++L l + ++
CP001876_0 262 ----------KELLEKISRQSVKLNALTHKLNFVFNLNSE 291

CP001876_0737: domain 1 of 1, from 131 to 195: score 38.6, E = 5.2e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +a+l+HE+R+P+ +I+++a++L + +se ++
CP001876_0 131 SMGSVAAHLAHEIRNPIGSISLLASTLFA-----------RSELKN- 165

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ i++++ r +r++n L +++ +
CP001876_0 166 ----------KHIVLEIQKAIARVERIVNSTLLFTKGVHI 195


Histogram of all scores:
score obs exp (one = represents 6 sequences)
----- --- ---
-15 2 0|=
-14 5 0|=
-13 23 1|*===
-12 68 36|=====*======
-11 166 191|============================ *
-10 259 354|============================================ *
-9 319 366|====================================================== *
-8 275 274|=============================================*
-7 202 172|============================*=====
-6 122 99|================*====
-5 83 54|========*=====
-4 36 29|====*=
-3 26 15|==*==
-2 8 8|=*
-1 2 4|*
0 4 2|*
1 4 1|*
2 1 0|=
3 2 0|=
4 0 0|
5 0 0|
> 6 6 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 95.2194
P(chi-square) = 4.911e-16

Total sequences searched: 1613

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: