Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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Data for CP001888  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001888.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001888_0484 CDS_541352-542410 74.8 1.7e-21 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001888_0484 1/1 151 216 .. 1 87 [] 74.8 1.7e-21

Alignments of top-scoring domains:
CP001888_0484: domain 1 of 1, from 151 to 216: score 74.8, E = 1.7e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ +a+l+HE+R+PLt+I+g+a lL+e els+e +
CP001888_0 151 ELGKIAATLAHEIRNPLTSISGFATLLKE----------ELSSERH- 186

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l++i++ +++l++L++ +L++++i+
CP001888_0 187 ----------QRMLNVIIEGTRSLNSLVSSMLEYTKIQPL 216


Histogram of all scores:
score obs exp (one = represents 3 sequences)
----- --- ---
-15 1 0|=
-14 7 0|===
-13 12 0|====
-12 53 21|======*===========
-11 92 109|=============================== *
-10 163 203|======================================================= *
-9 163 210|======================================================= *
-8 154 157|====================================================*
-7 102 99|================================*=
-6 79 57|==================*========
-5 42 31|==========*===
-4 24 16|=====*==
-3 13 8|==*==
-2 7 4|=*=
-1 7 2|*==
0 1 1|*
1 3 0|=
2 1 0|=
3 1 0|=
4 0 0|
5 0 0|
> 6 2 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 86.7281
P(chi-square) = 7.365e-15

Total sequences searched: 927

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: