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Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
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Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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264 projects found  

3 accessions found for Allochromatium vinosum DSM 180  

Data for CP001896  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001896.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001896_2558 CDS_2963928-2959966 103.1 5.2e-29 1
CP001896_2115 CDS_2479287-2475526 103.0 5.8e-29 1
CP001896_1708 CDS_2004852-2003209 100.9 2.3e-28 1
CP001896_2808 CDS_3251728-3246611 99.3 6.5e-28 1
CP001896_2279 CDS_2663667-2659315 98.4 1.1e-27 1
CP001896_0411 CDS_486670-489006 98.4 1.2e-27 1
CP001896_2550 CDS_2947323-2950007 97.8 1.7e-27 1
CP001896_2339 CDS_2719250-2716629 96.5 4e-27 2
CP001896_0235 CDS_289762-286691 95.7 6.8e-27 1
CP001896_2451 CDS_2838047-2840323 95.5 7.7e-27 1
CP001896_0700 CDS_843572-840681 94.8 1.2e-26 1
CP001896_1453 CDS_1725078-1728011 94.3 1.7e-26 1
CP001896_0726 CDS_876552-874264 89.8 3.2e-25 1
CP001896_2805 CDS_3243126-3245246 88.3 8.3e-25 1
CP001896_3012 CDS_3475512-3473641 88.3 8.4e-25 2
CP001896_2543 CDS_2935912-2940222 88.1 9.5e-25 1
CP001896_2738 CDS_3166969-3169389 87.5 1.4e-24 1
CP001896_2264 CDS_2643500-2646103 87.2 1.8e-24 1
CP001896_1021 CDS_1207972-1204811 86.2 3.3e-24 1
CP001896_1825 CDS_2153626-2151359 85.4 5.4e-24 1
CP001896_1335 CDS_1576221-1571269 84.9 7.8e-24 1
CP001896_1452 CDS_1725007-1721498 83.5 1.9e-23 1
CP001896_0672 CDS_811208-813397 83.3 2.1e-23 1
CP001896_2428 CDS_2814743-2812668 83.2 2.3e-23 1
CP001896_0422 CDS_501238-503916 82.3 4.2e-23 1
CP001896_1336 CDS_1582192-1576208 81.9 5.3e-23 1
CP001896_1603 CDS_1906592-1907968 81.8 5.9e-23 1
CP001896_2262 CDS_2640349-2638679 81.0 9.7e-23 1
CP001896_1337 CDS_1585305-1582393 80.7 1.2e-22 1
CP001896_1023 CDS_1209922-1214055 80.2 1.7e-22 1
CP001896_1339 CDS_1590396-1586284 79.6 2.5e-22 1
CP001896_0470 CDS_562342-559154 78.3 5.7e-22 1
CP001896_1451 CDS_1718769-1721486 75.2 4.2e-21 1
CP001896_1707 CDS_2003189-2000475 74.0 9.1e-21 1
CP001896_0352 CDS_428929-430284 72.3 2.9e-20 1
CP001896_0687 CDS_825670-822557 72.1 3.3e-20 1
CP001896_1128 CDS_1342145-1344820 71.5 4.7e-20 1
CP001896_2844 CDS_3287534-3289570 64.2 5.7e-18 1
CP001896_0676 CDS_817821-815725 64.1 6.1e-18 1
CP001896_0302 CDS_374360-372765 62.0 2.4e-17 1
CP001896_2603 CDS_3025039-3022874 60.4 6.5e-17 1
CP001896_0412 CDS_489003-493145 56.7 7.4e-16 1
CP001896_2519 CDS_2913025-2914500 55.8 1.3e-15 1
CP001896_2927 CDS_3384375-3383296 54.8 2.6e-15 1
CP001896_2261 CDS_2638682-2637240 54.6 2.9e-15 1
CP001896_0914 CDS_1086241-1085153 53.9 4.6e-15 1
CP001896_2541 CDS_2933982-2935457 52.5 1.1e-14 1
CP001896_1465 CDS_1745245-1743671 51.3 2.5e-14 1
CP001896_2419 CDS_2804133-2805239 43.5 4e-12 1
CP001896_0269 CDS_332432-333847 42.5 7.7e-12 1
CP001896_2027 CDS_2380249-2382450 42.3 9.2e-12 1
CP001896_0944 CDS_1124709-1122673 41.5 1.5e-11 1
CP001896_1034 CDS_1224526-1226388 31.5 1e-08 1
CP001896_0617 CDS_748042-750585 29.5 3.9e-08 1
CP001896_0228 CDS_274960-276915 27.9 1.1e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001896_2558 1/1 663 728 .. 1 87 [] 103.1 5.2e-29
CP001896_2115 1/1 527 592 .. 1 87 [] 103.0 5.8e-29
CP001896_1708 1/1 144 209 .. 1 87 [] 100.9 2.3e-28
CP001896_2808 1/1 970 1035 .. 1 87 [] 99.3 6.5e-28
CP001896_2279 1/1 703 768 .. 1 87 [] 98.4 1.1e-27
CP001896_0411 1/1 269 334 .. 1 87 [] 98.4 1.2e-27
CP001896_2550 1/1 372 437 .. 1 87 [] 97.8 1.7e-27
CP001896_0235 1/1 271 336 .. 1 87 [] 95.7 6.8e-27
CP001896_2451 1/1 274 340 .. 1 87 [] 95.5 7.7e-27
CP001896_2339 2/2 275 340 .. 1 87 [] 95.3 8.9e-27
CP001896_0700 1/1 592 660 .. 1 87 [] 94.8 1.2e-26
CP001896_1453 1/1 578 643 .. 1 87 [] 94.3 1.7e-26
CP001896_0726 1/1 252 317 .. 1 87 [] 89.8 3.2e-25
CP001896_2805 1/1 462 527 .. 1 87 [] 88.3 8.3e-25
CP001896_2543 1/1 843 908 .. 1 87 [] 88.1 9.5e-25
CP001896_2738 1/1 394 461 .. 1 87 [] 87.5 1.4e-24
CP001896_2264 1/1 500 565 .. 1 87 [] 87.2 1.8e-24
CP001896_1021 1/1 446 511 .. 1 87 [] 86.2 3.3e-24
CP001896_1825 1/1 160 225 .. 1 87 [] 85.4 5.4e-24
CP001896_1335 1/1 1042 1107 .. 1 87 [] 84.9 7.8e-24
CP001896_3012 2/2 238 306 .. 1 87 [] 84.0 1.4e-23
CP001896_1452 1/1 428 494 .. 1 87 [] 83.5 1.9e-23
CP001896_0672 1/1 354 419 .. 1 87 [] 83.3 2.1e-23
CP001896_2428 1/1 175 241 .. 1 87 [] 83.2 2.3e-23
CP001896_0422 1/1 515 580 .. 1 87 [] 82.3 4.2e-23
CP001896_1336 1/1 1239 1304 .. 1 87 [] 81.9 5.3e-23
CP001896_1603 1/1 218 284 .. 1 87 [] 81.8 5.9e-23
CP001896_2262 1/1 209 276 .. 1 87 [] 81.0 9.7e-23
CP001896_1337 1/1 377 442 .. 1 87 [] 80.7 1.2e-22
CP001896_1023 1/1 759 824 .. 1 87 [] 80.2 1.7e-22
CP001896_1339 1/1 636 701 .. 1 87 [] 79.6 2.5e-22
CP001896_0470 1/1 534 599 .. 1 87 [] 78.3 5.7e-22
CP001896_1451 1/1 524 589 .. 1 87 [] 75.2 4.2e-21
CP001896_1707 1/1 504 572 .. 1 87 [] 74.0 9.1e-21
CP001896_0352 1/1 212 277 .. 1 87 [] 72.3 2.9e-20
CP001896_0687 1/1 670 735 .. 1 87 [] 72.1 3.3e-20
CP001896_1128 1/1 657 725 .. 1 87 [] 71.5 4.7e-20
CP001896_2844 1/1 445 510 .. 1 87 [] 64.2 5.7e-18
CP001896_0676 1/1 221 288 .. 1 87 [] 64.1 6.1e-18
CP001896_0302 1/1 311 379 .. 1 87 [] 62.0 2.4e-17
CP001896_2603 1/1 354 421 .. 1 87 [] 60.4 6.5e-17
CP001896_0412 1/1 16 76 .. 6 87 .] 56.7 7.4e-16
CP001896_2519 1/1 265 329 .. 1 87 [] 55.8 1.3e-15
CP001896_2927 1/1 137 202 .. 1 87 [] 54.8 2.6e-15
CP001896_2261 1/1 171 236 .. 1 87 [] 54.6 2.9e-15
CP001896_0914 1/1 134 198 .. 1 87 [] 53.9 4.6e-15
CP001896_2541 1/1 258 326 .. 1 87 [] 52.5 1.1e-14
CP001896_1465 1/1 310 376 .. 1 87 [] 51.3 2.5e-14
CP001896_2419 1/1 124 190 .. 1 87 [] 43.5 4e-12
CP001896_0269 1/1 249 315 .. 1 87 [] 42.5 7.7e-12
CP001896_2027 1/1 495 567 .. 1 87 [] 42.3 9.2e-12
CP001896_0944 1/1 167 232 .. 1 87 [] 41.5 1.5e-11
CP001896_1034 1/1 399 467 .. 1 87 [] 31.5 1e-08
CP001896_0617 1/1 608 678 .. 1 87 [] 29.5 3.9e-08
CP001896_0228 1/1 426 493 .. 1 87 [] 27.9 1.1e-07

Alignments of top-scoring domains:
CP001896_2558: domain 1 of 1, from 663 to 728: score 103.1, E = 5.2e-29
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+flan+sHE+RTP+++++g + lLl+ t+l++eq
CP001896_2 663 AKSQFLANMSHEIRTPMNGVIGITGLLLD---------TDLDPEQ-- 698

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ e++++++e ll+Lind+Ld+s+ieag
CP001896_2 699 ----------RRLAEIVRDSGENLLALINDILDFSKIEAG 728

CP001896_2115: domain 1 of 1, from 527 to 592: score 103.0, E = 5.8e-29
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+flan+sHE+RTP++a++g+++lLle t+l+++q
CP001896_2 527 AKSQFLANMSHEIRTPMNAVIGLSDLLLE---------TPLDAKQ-- 562

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+yl +i+++++ ll +ind+Ld+s+ieag
CP001896_2 563 ----------RDYLGKIRESSRLLLGIINDILDYSKIEAG 592

CP001896_1708: domain 1 of 1, from 144 to 209: score 100.9, E = 2.3e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHE+RTPL+aI+g elL + t l++ q
CP001896_1 144 AKSEFLANMSHEIRTPLNAIIGIGELLAK---------TRLDATQ-- 179

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
rey+++i+ +++ +l+Li+d+Ld+s+ieag
CP001896_1 180 ----------REYVHIIETSGNAMLSLIEDILDYSKIEAG 209

CP001896_2808: domain 1 of 1, from 970 to 1035: score 99.3, E = 6.5e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHE+RTP++aI+g+++l+l tel++ q
CP001896_2 970 AKSSFLANMSHEIRTPMNAIIGLSHLALQ---------TELDARQ-- 1005

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r y+e+++r+ae+ll +ind+Ld+s+ieag
CP001896_2 1006 ----------RNYIEKVHRSAESLLGIINDILDFSKIEAG 1035

CP001896_2279: domain 1 of 1, from 703 to 768: score 98.4, E = 1.1e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHE+RTP++aI+g+a+l+l t+l++ q
CP001896_2 703 AKSNFLANMSHEIRTPMNAIIGMAHLALQ---------TPLDARQ-- 738

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y+e+++r+ae ll ++nd+Ld+s+ieag
CP001896_2 739 ----------RDYIEKVHRSAEALLGILNDILDFSKIEAG 768

CP001896_0411: domain 1 of 1, from 269 to 334: score 98.4, E = 1.2e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHE+RTP+++I+g++elL+e t+l++ q
CP001896_0 269 AKSHFLANMSHEIRTPMNGIIGMTELLQE---------TDLNAAQ-- 304

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ +++i+++a l r+ind+Ld+srieag
CP001896_0 305 ----------RDCTRVIQDSAAALMRIINDILDMSRIEAG 334

CP001896_2550: domain 1 of 1, from 372 to 437: score 97.8, E = 1.7e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHE+RTP++a++g+aelLl+ t+l+++q
CP001896_2 372 AKSDFLATMSHEIRTPMNAVLGMAELLLA---------TDLDAQQ-- 407

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +ti+r++ ll++ind+Ld s+ieag
CP001896_2 408 ----------QRFAQTIHRSGGALLDIINDILDVSKIEAG 437

CP001896_0235: domain 1 of 1, from 271 to 336: score 95.7, E = 6.8e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fl+n+sHE+RTP++aI+gy++l++ ++l++ q
CP001896_0 271 AKSAFLSNMSHEIRTPMNAIIGYSHLIRQ---------EPLTPRQ-- 306

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e l+++ ++a++ll++ind+Ldls+iea+
CP001896_0 307 ----------TEQLNRLNDSAQHLLQIINDILDLSKIEAE 336

CP001896_2451: domain 1 of 1, from 274 to 340: score 95.5, E = 7.7e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+f+an+sHE+RTPLtaI g+ae+L e +++++e+
CP001896_2 274 AKSRFVANMSHEIRTPLTAITGFAETLTE---------SDQPPEE-- 309

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++ i+r +++l +L+n++Ld+srie+g
CP001896_2 310 ---------CERAVNAIIRNSRYLMELVNNILDFSRIESG 340

CP001896_2339: domain 2 of 2, from 275 to 340: score 95.3, E = 8.9e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHE+RTPL+aI+g+ +lLl+ + l++ q
CP001896_2 275 AKSEFLANMSHEIRTPLNAIIGLGQLLLD---------SGLDSRQ-- 310

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y ++i++ ++ llr++nd+Ld+s+ieag
CP001896_2 311 ----------RDYMNKIRQGSDALLRILNDVLDYSKIEAG 340

CP001896_0700: domain 1 of 1, from 592 to 660: score 94.8, E = 1.2e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHELRTPL+aI+g++++L + + ++l+++q
CP001896_0 592 AKSRFLAHMSHELRTPLNAIIGFSQMLDM------GALDPLTAQQ-- 630

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++ i++++++ll+Lind+Ldl+rie+g
CP001896_0 631 ----------QTAVSHIRDSGRHLLELINDILDLARIESG 660

CP001896_1453: domain 1 of 1, from 578 to 643: score 94.3, E = 1.7e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+eflan+sHE+RTP++a++g+a lL++ ++l++e
CP001896_1 578 SKGEFLANMSHEIRTPMNAVLGLAYLLER---------QPLPDEA-- 613

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+ + i+r++++ll++ind+Ld+s+ie+g
CP001896_1 614 ----------HELARQIHRSGQSLLHIINDILDFSKIESG 643

CP001896_0726: domain 1 of 1, from 252 to 317: score 89.8, E = 3.2e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks +la++sHE+RTPL++I g+aelL+ +el+++q
CP001896_0 252 AKSHLLAHMSHEIRTPLNVITGLAELLEQ---------GELNAQQ-- 287

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++i++++e+ll +++d+Ldlsrieag
CP001896_0 288 ----------QHQVRRIQEAGESLLGILDDILDLSRIEAG 317

CP001896_2805: domain 1 of 1, from 462 to 527: score 88.3, E = 8.3e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ fl+++sHELRTP+++I+g+++lLle ++l+e q
CP001896_2 462 AKTTFLSTMSHELRTPMHGILGMTQLLLE---------SDLNERQ-- 497

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l+t++r+a+ ll+++ d+Ld++r++a+
CP001896_2 498 ----------RRQLDTVKRSADTLLAILADILDYTRMDAE 527

CP001896_2543: domain 1 of 1, from 843 to 908: score 88.1, E = 9.5e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHE+RTPL+a++g+a++ + ++ +
CP001896_2 843 LKSEFLANMSHEIRTPLNAVLGFAQIGAR---------ETDPNRA-- 878

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r ++++il++++ ll +ind+Ld+s+ieag
CP001896_2 879 ----------RTFFRRILDSGQLLLGIINDILDFSKIEAG 908

CP001896_2738: domain 1 of 1, from 394 to 461: score 87.5, E = 1.4e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+flan+sHELRTPL++I++++++L +e+ ls+ q
CP001896_2 394 YKSQFLANVSHELRTPLNSILLLSKMLGAEG-------NGLSPTQ-- 431

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ ++i+++++ l++Li+++Ld+srie+g
CP001896_2 432 ----------RRQAQVIHEAGRDLRALIDNILDISRIESG 461

CP001896_2264: domain 1 of 1, from 500 to 565: score 87.2, E = 1.8e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+eflan+sHE+RTP++a++g+++lLl+ ++l ++q
CP001896_2 500 AKGEFLANMSHEIRTPMHAVIGLSSLLLD---------STLLPQQ-- 535

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+yle+i+ ++ ll +nd+Ld+s+ieag
CP001896_2 536 ----------RDYLERIHLAGTALLGVLNDILDYSKIEAG 565

CP001896_1021: domain 1 of 1, from 446 to 511: score 86.2, E = 3.3e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHE+RTP++aI+g+++lL++ + +++ q
CP001896_1 446 AKSAFLANMSHEIRTPMNAILGLTHLLRR---------DGATATQ-- 481

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e l +i++++++ll+++nd+Ldlsrie+g
CP001896_1 482 ----------NERLGKIESATRHLLAILNDILDLSRIESG 511

CP001896_1825: domain 1 of 1, from 160 to 225: score 85.4, E = 5.4e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHELRTPL+a++g++++L+ ++l+ eq
CP001896_1 160 AKSDFLAHMSHELRTPLNAVIGLTQVLEQ---------ANLPLEQ-- 195

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r ++++i+ +++ +l++ nd+Ldl++iea+
CP001896_1 196 ----------RSLVQRIRLAGQAMLQISNDILDLAKIEAN 225

CP001896_1335: domain 1 of 1, from 1042 to 1107: score 84.9, E = 7.8e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHE+RTP++a++g++ lL+ ++l++
CP001896_1 1042 AKSAFLANMSHEIRTPMNAVLGFCYLLEQ---------HALDPAS-- 1077

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++++i+++++ ll+Lind+Ld+s+ieag
CP001896_1 1078 ----------ADLVRKIHNAGQALLDLINDILDFSKIEAG 1107

CP001896_3012: domain 2 of 2, from 238 to 306: score 84.0, E = 1.4e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+efla++sHELRTPLt+I+g++e++ ++l ++ls++q
CP001896_3 238 AKDEFLAAMSHELRTPLTSILGLSETMGDGL------LGPLSAQQ-- 276

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++ +++ + +ll+Lind+Ld+sr +g
CP001896_3 277 ----------EKAIRMVHENGTHLLELINDILDMSRVASG 306

CP001896_1452: domain 1 of 1, from 428 to 494: score 83.5, E = 1.9e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+seflan+sHE+RTP++a++g+a lL++ ++l+ee
CP001896_1 428 ARSEFLANMSHEIRTPMNAVLGLAYLLER--------QENLPEEA-- 464

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++i++++++ll +ind+Ld s+ie+g
CP001896_1 465 ----------CDLARKIYHSGQSLLGIINDILDVSKIESG 494

CP001896_0672: domain 1 of 1, from 354 to 419: score 83.3, E = 2.1e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHE+RTPL+aI+g+a+l++ + l ++q
CP001896_0 354 AKSEFLANMSHEIRTPLNAISGMAHLIRQ---------AGLAPDQ-- 389

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l++++ ++ +ll+Lin +L++s+ieag
CP001896_0 390 ----------TARLDKLEAASTHLLNLINAILEFSKIEAG 419

CP001896_2428: domain 1 of 1, from 175 to 241: score 83.2, E = 2.3e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHE+RTPL+aI+g++ lL + d+ se
CP001896_2 175 AKSAFLANMSHEIRTPLNAILGLTYLLIR--------DQSSSERS-- 211

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++l +i+++a++ll++ind+Ld s+ieag
CP001896_2 212 ----------RDILTKIEHSANHLLSIINDILDVSKIEAG 241

CP001896_0422: domain 1 of 1, from 515 to 580: score 82.3, E = 4.2e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHE+R+PL+a++g+a l++ ++l + q
CP001896_0 515 AKSIFLANMSHEIRNPLNAVLGMARLMRQ---------QALIPTQ-- 550

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l++i+ ++++ll+Lind+Ldls+ie g
CP001896_0 551 ----------AERLDKIEVAGRHLLDLINDILDLSKIEDG 580

CP001896_1336: domain 1 of 1, from 1239 to 1304: score 81.9, E = 5.3e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHE+RTP++a++g++ lL+ +l++
CP001896_1 1239 AKSAFLANMSHEIRTPMNAVLGFCYLLEQ---------RALDPTS-- 1274

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++++i+ +++ ll Lind+Ld+s+ieag
CP001896_1 1275 ----------ADLVRKIHGAGQALLGLINDILDFSKIEAG 1304

CP001896_1603: domain 1 of 1, from 218 to 284: score 81.8, E = 5.9e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHELRTPLt+I g++e+Ll+ ++ ++ +
CP001896_1 218 IRRDFVANASHELRTPLTVIAGFLETLLD---------APGTPTPH- 254

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l ++++++r+ ++i+dlL+lsr+e
CP001896_1 255 ----------RRPLTLMRNQTDRMCSIIEDLLTLSRLEMR 284

CP001896_2262: domain 1 of 1, from 209 to 276: score 81.0, E = 9.7e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+ HELRTP++a++g++ lLl+++ +++++ q
CP001896_2 209 AKSAFLANMGHELRTPMNALIGLSNLLLDGS-------EAMTPHQ-- 246

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+yl +i+++a l++L+nd+Ld+s+ e+g
CP001896_2 247 ----------RDYLLKIHDSAAALSSLLNDILDYSKVESG 276

CP001896_1337: domain 1 of 1, from 377 to 442: score 80.7, E = 1.2e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTP++a++g++ lL + l++e
CP001896_1 377 AKSVFLATMSHEIRTPMNAVLGFCNLLYR---------RRLDAES-- 412

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++++i+ ++ ll+Li+d+Ld+sriea+
CP001896_1 413 ----------HDLVRKIQVSGALLLNLIEDILDFSRIEAN 442

CP001896_1023: domain 1 of 1, from 759 to 824: score 80.2, E = 1.7e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHE+RTP++aI+g+a+lL+++l ++++
CP001896_1 759 AKSAFLANMSHEIRTPMNAILGLAHLLRRDLI------DPANINR-- 797

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l++i+++a++ll+ ind+Ldls+ieag
CP001896_1 798 -------------LDKIESAARHLLAVINDILDLSKIEAG 824

CP001896_1339: domain 1 of 1, from 636 to 701: score 79.6, E = 2.5e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHE+RTP++a++g+a lL++ +l++
CP001896_1 636 AKSEFLANMSHEIRTPMNAVLGLAYLLER---------MDLPDAA-- 671

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e++++i+ +++ ll ++nd+Ld+s+ie+g
CP001896_1 672 ----------HELTRKIHLAGRNLLGILNDILDFSKIESG 701

CP001896_0470: domain 1 of 1, from 534 to 599: score 78.3, E = 5.7e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHE+RTP++aI+g+++lL + e s + +
CP001896_0 534 AKSLFLANMSHEIRTPMNAIIGLTHLLGR----------EISVPAQ- 569

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l +i+ +a++ll+ ind+Ld+s+ieag
CP001896_0 570 ----------RDRLLKIDGAAKHLLSVINDILDISKIEAG 599

CP001896_1451: domain 1 of 1, from 524 to 589: score 75.2, E = 4.2e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHE+RTP++aI+g+ +lL+ e +++ +
CP001896_1 524 AKSAFLANMSHEIRTPMNAIIGLNHLLQH----------EVTDPRA- 559

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l ++ ++a +llr+i+d+Ldls+ieag
CP001896_1 560 ----------HDWLTKVGEAAAHLLRIIDDILDLSKIEAG 589

CP001896_1707: domain 1 of 1, from 504 to 572: score 74.0, E = 9.1e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+f++++sHELRTPL aI+gy++l++e ++ +e s+ q
CP001896_1 504 LKSKFISMASHELRTPLIAIQGYVDLIRE------GRGGEISAAQ-- 542

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +l+t+ r a rl r++++lLd+srie++
CP001896_1 543 ----------RTMLDTVSRNATRLARIVSELLDISRIEEN 572

CP001896_0352: domain 1 of 1, from 212 to 277: score 72.3, E = 2.9e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHELRTPL+aI g+a l ++ + s +q
CP001896_0 212 AKSAFLANMSHELRTPLNAITGMAYLVRA---------SGVSVKQ-- 247

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+t++ ++++ll++i+ +L+ls+ieag
CP001896_0 248 ----------AGWLDTLDGASRHLLEIISAILELSKIEAG 277

CP001896_0687: domain 1 of 1, from 670 to 735: score 72.1, E = 3.3e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+efla+l+HELR+PL+ I+ +++lL+ + ++
CP001896_0 670 RKDEFLAMLAHELRNPLAPISNALQLLKQ---------SRFAGQE-- 705

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l +i+r+a +l+rL++dlLd sri g
CP001896_0 706 ----------AWCLAVIDRQAAHLQRLVDDLLDVSRITRG 735

CP001896_1128: domain 1 of 1, from 657 to 725: score 71.5, E = 4.7e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s +l+++sH+LRTPL++++g+a+ L+ d++ls ++r
CP001896_1 657 LRSALLSSVSHDLRTPLASMIGAASSLRS-------LDEALSTDDR- 695

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+l+++++e+erl+r i++lLd++r+++g
CP001896_1 696 ----------RELLDSVISEGERLNRYIQNLLDMTRLGHG 725

CP001896_2844: domain 1 of 1, from 445 to 510: score 64.2, E = 5.7e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks +lan+sHE R P++aI+g+ + L++ ++ ++eq
CP001896_2 445 AKSILLANMSHEVRAPINAILGLNHRLKA---------SANDPEQ-- 480

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l i +++ +llr+ nd+Ldlsr+eag
CP001896_2 481 ----------SQRLGQIAEAGYHLLRIANDILDLSRMEAG 510

CP001896_0676: domain 1 of 1, from 221 to 288: score 64.1, E = 6.1e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+ fla+lsHELR+PL++I ++ +L+ ++ +e ++e
CP001896_0 221 RKDAFLATLSHELRNPLASIGHALGALRLFG-------GEDGSEA-- 258

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+l +i+r+ +l rL++dlL+ sri g
CP001896_0 259 ----------LEALAIIERQFAHLVRLLDDLLEVSRITCG 288

CP001896_0302: domain 1 of 1, from 311 to 379: score 62.0, E = 2.4e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+ ++sH+L+ PL +I gy+ lLle +++ l+ee
CP001896_0 311 ELETFTYSVSHDLKAPLRGIDGYSRLLLE------DHRDRLDEEG-- 349

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l+ +++ + ++ +Li+dlLd+sr+e
CP001896_0 350 ----------QLFLNNVRQGVAQMGQLIEDLLDYSRMERR 379

CP001896_2603: domain 1 of 1, from 354 to 421: score 60.4, E = 6.5e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+efla l HELR+P++ Ir ++e+L++ + +++ +
CP001896_2 354 RKDEFLAVLGHELRNPMAPIRHAVEILRA--------LGVDGDPRI- 391

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r ++e+++r++ ++ rL++dlLd sri +g
CP001896_2 392 ----------RWAIEVLDRQTAHMGRLLDDLLDVSRIVQG 421

CP001896_0412: domain 1 of 1, from 16 to 76: score 56.7, E = 7.4e-16
*->lanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrlpeLRl
la+lsH L T L++++g++elL e t l++ q
CP001896_0 16 LADLSHALHTQLNGLLGMSELLME---------TVLDPTQ------- 46

edpeyreyletilreaerllrLindlLdlsrieag<-*
r y+et+ r+++rl++ i+d+Ldl+rie+g
CP001896_0 47 -----RGYVETLARAGRRLQDVIRDVLDLARIETG 76

CP001896_2519: domain 1 of 1, from 265 to 329: score 55.8, E = 1.3e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++a++sHELRTP++ +r+ +e+L++++ + +
CP001896_2 265 ARRRWAADISHELRTPIALLRAELEALQDGV-------RPFD----- 299

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++l+ ++ ++ rl rLi+dl +l+ + g
CP001896_2 300 ----------RDALDALHGDILRLGRLIDDLYELTTTDMG 329

CP001896_2927: domain 1 of 1, from 137 to 202: score 54.8, E = 2.6e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + +l++l+HE+++PL ++rg+a+lL++ el++ +
CP001896_2 137 ATQALLRGLAHEIKNPLGGLRGAAQLLER----------ELPDAAL- 172

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
rey+++i++ea+rl++L n++ r+
CP001896_2 173 ----------REYTRIIIDEADRLQALMNRMIGPHRLPRR 202

CP001896_2261: domain 1 of 1, from 171 to 236: score 54.6, E = 2.9e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fl n+ HE+ TPL+ I+g+a l+++++ ++ ++++r
CP001896_2 171 AKSVFLTNVGHEFLTPLHQIMGLAYLARRDS-------QDDNAKTR- 209

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++r+++rl ++indlL+lsr+e+
CP001896_2 210 -------------IDHLERASQRLFHIINDLLTLSRAESD 236

CP001896_0914: domain 1 of 1, from 134 to 198: score 53.9, E = 4.6e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ + a+++HELRTP+t +rg ++ L e + s+
CP001896_0 134 EREFWNAAIAHELRTPVTILRGRLQGLAE---------GVFSPSS-- 169

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e++e +lr++e l+rLi+dl+ ls ++g
CP001896_0 170 -----------EIFEGLLRQVEGLNRLIEDLRVLSLNDSG 198

CP001896_2541: domain 1 of 1, from 258 to 326: score 52.5, E = 1.1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f ++sH+LR PL aI g++ +L+e++ ++l++e
CP001896_2 258 DLENFSYSVSHDLRAPLRAIDGFIGILREDYA------ANLDAEG-- 296

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ ++ a+ ++rLi+d+L lsr++
CP001896_2 297 ----------LRLFGVVSANARKMERLIDDILALSRAGRL 326

CP001896_1465: domain 1 of 1, from 310 to 376: score 51.3, E = 2.5e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ ++a+++H +R+PL+aI+ + +lL e+ ++ls+e+
CP001896_1 310 SLGTLTASIAHNIRNPLSAISHAGQLLSEG--------PALSDED-- 346

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +l++++r + r+++ ++ +L+lsr +
CP001896_1 347 ----------RHLLDIVQRNSARIEETVRSVLQLSRGNQV 376

CP001896_2419: domain 1 of 1, from 124 to 190: score 43.5, E = 4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++a+++H++++ L aI+g++elL++ el +e
CP001896_2 124 AVGTLAAGIAHDFNNILGAILGFSELLED----------ELAPES-- 158

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ r l i++++ r ++Li ++L+++r a
CP001896_2 159 -AG-------RHHLAYIQQASFRARDLIARMLTFARDLAD 190

CP001896_0269: domain 1 of 1, from 249 to 315: score 42.5, E = 7.7e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++ n++H+LRTPLt +r +elL + + s+e
CP001896_0 249 SVRQVSDNIAHDLRTPLTRLRNKLELLAA--------ALAESSES-- 285

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + e ++ +ae ll+ n lL ++r+e+g
CP001896_0 286 ----------RLLAEEAIADAEELLATFNALLRIARLESG 315

CP001896_2027: domain 1 of 1, from 495 to 567: score 42.3, E = 9.2e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a e ++ l+HE+++PLt I++ ae L+ +l la+ +e ++ +
CP001896_2 495 AWAEVARRLAHEIKNPLTPIQLSAERLRHKL---LAKADENDARII- 537

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ ti++++e + +++nd+ d+++
CP001896_2 538 ----------ERATGTIIQQVEAMKAMVNDFSDYAKSPRL 567

CP001896_0944: domain 1 of 1, from 167 to 232: score 41.5, E = 1.5e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++ la++ HE+R P+ I+ ++el l t l q
CP001896_0 167 ARNQRLADIGHEIRVPVKDILELSELTLH---------TSLEQTQ-- 202

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r yl+ i++++ rll +i++lLd++rie+g
CP001896_0 203 ----------RHYLDLIRSATARLLGQIDELLDFARIETG 232

CP001896_1034: domain 1 of 1, from 399 to 467: score 31.5, E = 1e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ a++ HEL++PL+aIr+ya+ l l+ + l + +
CP001896_1 399 TLGQLSAGINHELNQPLAAIRAYADNGLL-----LLAKGRLEDVE-- 438

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l il+ +er+ ++ +l ++r +
CP001896_1 439 -----------TNLGQILELTERMAKIGAQLKLFARKTSA 467

CP001896_0617: domain 1 of 1, from 608 to 678: score 29.5, E = 3.9e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e + +++HEL++PL+aI ya + ++l + + +e++
CP001896_0 608 TMGEVATGMAHELNQPLSAIVNYANGCVRRL-----QGGQGQPEEL- 648

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + i +a+r +++i +l+ l + +
CP001896_0 649 ----------VGAMNQITAQAKRASEIIKRLRALVGKQPP 678

CP001896_0228: domain 1 of 1, from 426 to 493: score 27.9, E = 1.1e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ ++ +lsHE+RTPL+ + + a L + ++++ ++
CP001896_0 426 EQRHLVDMLSHEFRTPLAIVDAVATNLTA--------VPPADGLDL- 463

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ ++ i+r++ +l +Li + L +e g
CP001896_0 464 ----------RRRVDQIRRATGSLAQLIANYLNNDLLERG 493


Histogram of all scores:
score obs exp (one = represents 9 sequences)
----- --- ---
-14 10 0|==
-13 24 2|*==
-12 115 69|=======*=====
-11 224 361|========================= *
-10 404 671|============================================= *
-9 517 693|==========================================================*
-8 515 519|=========================================================*
-7 458 327|====================================*==============
-6 284 188|====================*===========
-5 175 103|===========*========
-4 112 55|======*======
-3 71 29|===*====
-2 34 15|=*==
-1 23 8|*==
0 8 4|*
1 8 2|*
2 4 1|*
3 2 0|=
> 4 65 -|========


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 552.9722
P(chi-square) = 0

Total sequences searched: 3053

Whole sequence top hits:
tophits_s report:
Total hits: 55
Satisfying E cutoff: 55
Total memory: 22K

Domain top hits:
tophits_s report:
Total hits: 55
Satisfying E cutoff: 55
Total memory: 43K


Acknowledgements:

This research is funded by:

Developed by: