Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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3 accessions found for Allochromatium vinosum DSM 180  

Data for CP001896  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP001896.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001896_1024 CDS_1214052-1215716 57.3 1e-16 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001896_1024 1/1 334 403 .. 1 70 [] 57.3 1e-16

Alignments of top-scoring domains:
CP001896_1024: domain 1 of 1, from 334 to 403: score 57.3, E = 1e-16
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe.....eare
ER+ +A ELHDs++Q+L++++ q ++ d+ ++ + + ear
CP001896_1 334 ERNALAHELHDSLAQTLASLRFQCRMLD-----DSLAGcpipaEARN 375

aldeirelarealaevRrllgdLRpaal<-*
l++ir ++ea +e+R+ll +R + +
CP001896_1 376 DLARIRNGLDEAHTELRELLASFRAPLD 403


Histogram of all scores:
score obs exp (one = represents 8 sequences)
----- --- ---
-14 5 0|=
-13 32 0|====
-12 55 34|====*==
-11 88 279|=========== *
-10 263 649|================================= *
-9 411 737|==================================================== *
-8 427 568|====================================================== *
-7 455 357|============================================*============
-6 372 202|=========================*=====================
-5 373 108|=============*=================================
-4 187 56|======*=================
-3 147 29|===*===============
-2 93 14|=*==========
-1 62 7|*=======
0 29 3|*===
1 19 1|*==
2 14 0|==
3 8 0|=
4 3 0|=
5 5 0|=
6 1 0|=
7 1 0|=
> 8 3 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 2947.2319
P(chi-square) = 0

Total sequences searched: 3053

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: