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Data for CP001899  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001899.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001899_0269 CDS_240604-241941 33.0 3.3e-09 1
CP001899_1319 CDS_1167596-1168912 29.9 2.4e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001899_0269 1/1 251 312 .. 1 87 [] 33.0 3.3e-09
CP001899_1319 1/1 375 428 .. 6 87 .] 29.9 2.4e-08

Alignments of top-scoring domains:
CP001899_0269: domain 1 of 1, from 251 to 312: score 33.0, E = 3.3e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + ++H++ + LtaI++ya+lL+ee+
CP001899_0 251 DLRLINRIMRHDILNSLTAIQFYADLLEEEYK--------------- 282

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y+ +i++++e + +Li +++ ++ +
CP001899_0 283 ----------KDYVGKIKESTEKIVDLIKRIRVFELSLEK 312

CP001899_1319: domain 1 of 1, from 375 to 428: score 29.9, E = 2.4e-08
*->lanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrlpeLRl
+a l E+++PLtaI+g+ae e+
CP001899_1 375 FAILVDEIKNPLTAIMGLAEEKVED---------------------- 399

edpeyreyletilreaerllrLindlLdlsrieag<-*
+e ++i++++er+ +++ Ld ++e++
CP001899_1 400 -----EEVKKKIIEQVERIKNIVKK-LDEGWLESE 428


Histogram of all scores:
score obs exp (one = represents 8 sequences)
----- --- ---
-15 2 0|=
-14 15 0|==
-13 47 1|*=====
-12 158 56|======*=============
-11 284 293|====================================*
-10 441 545|======================================================== *
-9 452 563|========================================================= *
-8 413 421|====================================================*
-7 287 265|=================================*==
-6 154 152|==================*=
-5 100 83|==========*==
-4 41 44|=====*
-3 35 23|==*==
-2 20 12|=*=
-1 13 6|*=
0 8 3|*
1 3 1|*
2 2 0|=
> 3 5 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 245.1286
P(chi-square) = 0

Total sequences searched: 2480

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: