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2 accessions found for Methanocaldococcus sp. FS406-22  

Data for CP001901  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001901.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001901_0236 CDS_232186-230291 92.1 4.1e-26 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001901_0236 1/1 408 476 .. 1 87 [] 92.1 4.1e-26

Alignments of top-scoring domains:
CP001901_0236: domain 1 of 1, from 408 to 476: score 92.1, E = 4.1e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kse ++ +sHELRTPLt+I+gy+el l++l +el+e q
CP001901_0 408 LKSEIISIVSHELRTPLTSIKGYVELVLDGLM------GELNENQ-- 446

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ le++++ ++rl rLi+++Ldls+ie+g
CP001901_0 447 ----------RRCLEIAKNNIDRLKRLIDNMLDLSKIESG 476


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-15 4 0|=
-14 12 0|==
-13 43 1|*======
-12 117 41|=====*===========
-11 238 213|==============================*===
-10 355 396|=================================================== *
-9 335 409|================================================ *
-8 256 306|===================================== *
-7 188 193|===========================*
-6 97 111|============== *
-5 76 61|========*==
-4 41 32|====*=
-3 19 17|==*
-2 10 9|=*
-1 5 4|*
0 2 2|*
1 3 1|*
2 1 0|=
> 3 2 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 176.3934
P(chi-square) = 1.313e-32

Total sequences searched: 1804

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: