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Classification of phyla is from NCBI page
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264 projects found  

2 accessions found for Thioalkalivibrio sp. K90mix  

Data for CP001905  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001905.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001905_0532 CDS_566257-564164 95.7 5.8e-27 1
CP001905_0956 CDS_1019587-1018265 87.1 1.6e-24 1
CP001905_2096 CDS_2242489-2244138 69.5 1.5e-19 1
CP001905_0847 CDS_908223-905278 56.9 5.7e-16 1
CP001905_0049 CDS_56343-57440 55.0 2e-15 1
CP001905_0676 CDS_722409-724574 54.0 3.6e-15 1
CP001905_0985 CDS_1048646-1050130 52.0 1.4e-14 1
CP001905_0535 CDS_568540-570075 47.0 3.6e-13 1
CP001905_2242 CDS_2390632-2388422 46.0 6.9e-13 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001905_0532 1/1 312 380 .. 1 87 [] 95.7 5.8e-27
CP001905_0956 1/1 206 272 .. 1 87 [] 87.1 1.6e-24
CP001905_2096 1/1 310 376 .. 1 87 [] 69.5 1.5e-19
CP001905_0847 1/1 758 823 .. 1 87 [] 56.9 5.7e-16
CP001905_0049 1/1 138 195 .. 1 79 [. 55.0 2e-15
CP001905_0676 1/1 501 569 .. 1 87 [] 54.0 3.6e-15
CP001905_0985 1/1 247 315 .. 1 87 [] 52.0 1.4e-14
CP001905_0535 1/1 267 333 .. 1 87 [] 47.0 3.6e-13
CP001905_2242 1/1 499 571 .. 1 87 [] 46.0 6.9e-13

Alignments of top-scoring domains:
CP001905_0532: domain 1 of 1, from 312 to 380: score 95.7, E = 5.8e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aksefl+++sHELRTPL++I+g+++l+++ + ++l+e q
CP001905_0 312 AKSEFLSSMSHELRTPLNSILGFSQLMRA------DRTHPLPERQ-- 350

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +e i+r++++ll+Lind+Ldlsrieag
CP001905_0 351 ----------QRQVEHIERSGQHLLALINDILDLSRIEAG 380

CP001905_0956: domain 1 of 1, from 206 to 272: score 87.1, E = 1.6e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+an+sHELRTPLt++ g +e+L++el + +++
CP001905_0 206 MRRDFIANVSHELRTPLTVLYGVVETLEDEL--------ADQPDK-- 242

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++ +++++er+ L++dlL+lsr+e+g
CP001905_0 243 ----------ARSVKLLREQSERMKLLVDDLLTLSRLETG 272

CP001905_2096: domain 1 of 1, from 310 to 376: score 69.5, E = 1.5e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++a+++HE+R+PL aI+ a+lL e ++ l+ ++
CP001905_2 310 ALGRLTASIAHEIRNPLGAISHSAQLLAE--------SPQLTRPD-- 346

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l +i ++++r ++Li+++L lsr ++g
CP001905_2 347 ----------QRLLTIINKQSKRVNELISNVLSLSRRDTG 376

CP001905_0847: domain 1 of 1, from 758 to 823: score 56.9, E = 5.7e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+a+++HE+ +PLt+I +a+ L e+++e++
CP001905_0 758 SIGRFAAGVAHEIGNPLTGIASLAQNLPL----------EQDPEEV- 793

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r e il +++r++++++ l +++ +++g
CP001905_0 794 ----------RGTAEDILAQTRRINAIVQSLVTFAHADEG 823

CP001905_0049: domain 1 of 1, from 138 to 195: score 55.0, E = 2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +++l+HE+++PL ++rg+a+lL el+++ +
CP001905_0 138 ITRAVTRGLAHEIKNPLGGLRGAAQLLAS----------ELDDDGL- 173

peLRledpeyreyletilreaerllrLindlL<-*
+ey+ +i+rea+rl++L++++L
CP001905_0 174 ----------KEYTGIIIREADRLRSLVDRML 195

CP001905_0676: domain 1 of 1, from 501 to 569: score 54.0, E = 3.6e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f ++sH+L+ PL +I gy++lL+ ++ l++e
CP001905_0 501 ELESFSYAVSHDLKAPLRGIDGYSQLLESDYG------NVLDAEG-- 539

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++ i+ + ++++Li dlLd+sr+e
CP001905_0 540 ----------QMFIRNIRAGVAQMNELIGDLLDYSRMERR 569

CP001905_0985: domain 1 of 1, from 247 to 315: score 52.0, E = 1.4e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ ++++++HEL++PL I+++++l ee+ + ++ +
CP001905_0 247 ALGVLVSGVAHELNNPLGNISTALQLVSEEG-------PGGDPVLL- 285

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l+ ++ e+ r +++++ lL +sr + +
CP001905_0 286 ----------QEWLQQAEGETSRAQNIVRGLLMYSRQQPQ 315

CP001905_0535: domain 1 of 1, from 267 to 333: score 47.0, E = 3.6e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++a+++HEL TPL I g a+ + + + +++++
CP001905_0 267 AIGQLAAGVAHELGTPLGIIAGRAQRASR--------RLPADDPA-- 303

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + ++ e+er + ++++lLd++r
CP001905_0 304 ----------HKEMKELQAELERVETIVRQLLDFARRNPL 333

CP001905_2242: domain 1 of 1, from 499 to 571: score 46.0, E = 6.9e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e ++ l+HE+++PLt I++ ae L ++l ++ + + ++l
CP001905_2 499 AWGEVARRLAHEIKNPLTPIQLSAERLSRRL----GKVLDGADRDVL 541

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ ti++++e + L+n ++d++++
CP001905_2 542 ----------DRATGTIIQQVEAMKTLVNAFRDYAQAPRL 571


Histogram of all scores:
score obs exp (one = represents 9 sequences)
----- --- ---
-14 5 0|=
-13 29 1|*===
-12 99 58|======*====
-11 196 305|====================== *
-10 328 566|===================================== *
-9 499 584|======================================================== *
-8 482 437|================================================*=====
-7 349 275|==============================*========
-6 234 158|=================*========
-5 139 87|=========*======
-4 68 46|=====*==
-3 58 24|==*====
-2 24 12|=*=
-1 29 6|*===
0 5 3|*
1 10 1|*=
2 4 0|=
3 5 0|=
4 0 0|
5 1 0|=
6 0 0|
> 7 11 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 407.4917
P(chi-square) = 0

Total sequences searched: 2575

Whole sequence top hits:
tophits_s report:
Total hits: 9
Satisfying E cutoff: 9
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 9
Satisfying E cutoff: 9
Total memory: 24K


Acknowledgements:

This research is funded by:

Developed by: