Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
264 projects found  

3 accessions found for Enterobacter cloacae subsp. cloacae ATCC 13047  

Data for CP001918  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP001918.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001918_1610 CDS_1642694-1640898 77.4 2e-22 1
CP001918_3732 CDS_3845792-3847480 69.6 4.1e-20 1
CP001918_1114 CDS_1156305-1154764 63.8 2.1e-18 1
CP001918_0037 CDS_35125-36630 63.0 3.6e-18 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001918_1610 1/1 390 458 .. 1 70 [] 77.4 2e-22
CP001918_3732 1/1 361 428 .. 1 70 [] 69.6 4.1e-20
CP001918_1114 1/1 315 380 .. 1 70 [] 63.8 2.1e-18
CP001918_0037 1/1 303 369 .. 1 70 [] 63.0 3.6e-18

Alignments of top-scoring domains:
CP001918_1610: domain 1 of 1, from 390 to 458: score 77.4, E = 2e-22
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ERa IARELHDs++QsLs +k+q++ +++++ ++ pe ++ l +i
CP001918_1 390 ERATIARELHDSIAQSLSCMKMQVSCLQMQA--AEMPESNKALLSQI 434

relarealaevRrllgdLR.paal<-*
r ++++ ++R+ll+++R ++
CP001918_1 435 RNELNTSWVQLRELLTTFRlQLTE 458

CP001918_3732: domain 1 of 1, from 361 to 428: score 69.6, E = 4.1e-20
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ERa IARELHDs++Q Ls +++ql l++r++ + ++++a++ ++
CP001918_3 361 ERATIARELHDSLAQVLSYLRIQLALLKRAI--PQENAPAQTIITDF 405

relarealaevRrllgdLRpaal<-*
+ ++ a ++R+ll+++R +
CP001918_3 406 SRELNNAWHQLRELLTTFRLTLN 428

CP001918_1114: domain 1 of 1, from 315 to 380: score 63.8, E = 2.1e-18
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
R+ +ARELHD++gQ+++ai +q++l++r ++d + a ea+ +i
CP001918_1 315 TRKLLARELHDEIGQNITAIQIQSQLVKR----TSDTPLAIEAAGQI 357

relarealaevRrllgdLRpaal<-*
+lar+ +R+ll++LRp++l
CP001918_1 358 NDLARRIHHSTRQLLRQLRPPVL 380

CP001918_0037: domain 1 of 1, from 303 to 369: score 63.0, E = 3.6e-18
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
R+ ARELHD +gQ+++ai+ q++ ++rl+ +d++ +++ + i
CP001918_0 303 VRQEVARELHDDIGQTITAIRTQAGIVQRLA---ADNAGVKQGGAHI 346

relarealaevRrllgdLRpaal<-*
++l+ ++ vRrllg+LRp +l
CP001918_0 347 EQLSLGVYDSVRRLLGRLRPRQL 369


Histogram of all scores:
score obs exp (one = represents 17 sequences)
----- --- ---
-15 1 0|=
-14 46 0|===
-13 140 0|=========
-12 210 57|===*=========
-11 313 469|=================== *
-10 816 1088|================================================ *
-9 987 1236|==========================================================*
-8 733 952|============================================ *
-7 636 599|===================================*==
-6 427 339|===================*======
-5 361 181|==========*===========
-4 187 94|=====*=====
-3 97 48|==*===
-2 80 24|=*===
-1 29 12|*=
0 26 6|*=
1 16 3|*
2 4 1|*
3 3 0|=
4 2 0|=
5 0 0|
> 6 6 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 1169.6827
P(chi-square) = 0

Total sequences searched: 5120

Whole sequence top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: