Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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264 projects found  

3 accessions found for Enterobacter cloacae subsp. cloacae ATCC 13047  

Data for CP001919  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001919.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001919_0012 CDS_7766-6729 60.8 4.6e-18 1
CP001919_0036 CDS_29645-31120 59.2 1.3e-17 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001919_0012 1/1 126 192 .. 1 87 [] 60.8 4.6e-18
CP001919_0036 1/1 262 328 .. 1 87 [] 59.2 1.3e-17

Alignments of top-scoring domains:
CP001919_0012: domain 1 of 1, from 126 to 192: score 60.8, E = 4.6e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s+f ++++HELRTP++ +++ ++ +l+ e++ +
CP001919_0 126 KLSDFSSDIAHELRTPVSNLMMQTQFALA---------KERDVSH-- 161

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yre+l l+e++rl+r+ +d+L l+r e+g
CP001919_0 162 ---------YREILFANLEELKRLSRMTSDMLFLARSEHG 192

CP001919_0036: domain 1 of 1, from 262 to 328: score 59.2, E = 1.3e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f a+++HE+RTP+t + + +e++l ++++ ++
CP001919_0 262 RQANFSADIAHEIRTPITNLVTQTEIALS---------QDRTQREL- 298

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l + l+e +r+ ++++d+L l++++++
CP001919_0 299 ----------EDVLYSSLEEYNRMTKMVSDMLFLAQADNN 328


Histogram of all scores:
score obs exp (one = represents 1 sequences)
----- --- ---
-14 5 0|=====
-13 17 0|=================
-12 40 6|=====*==================================
-11 19 32|=================== *
-10 50 60|================================================== *
-9 39 62|======================================= *
-8 33 46|================================= *
-7 28 29|============================*
-6 23 16|===============*=======
-5 6 9|====== *
-4 3 4|===*
-3 6 2|=*====
> -2 5 -|=====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 205.1420
P(chi-square) = 1.769e-310

Total sequences searched: 274

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: