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Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
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Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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14 projects found  

1 accessions found for Dehalococcoides sp. GT  

Data for CP001924  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001924.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001924_0160 CDS_157834-159579 73.3 7e-21 1
CP001924_0555 CDS_527433-524875 72.8 9.5e-21 1
CP001924_1298 CDS_1243266-1246544 72.0 1.7e-20 1
CP001924_0150 CDS_151735-148547 70.1 5.5e-20 1
CP001924_1306 CDS_1253822-1258030 68.8 1.3e-19 1
CP001924_1312 CDS_1261780-1264338 66.6 5.6e-19 1
CP001924_0850 CDS_819026-815238 64.5 2.2e-18 1
CP001924_0883 CDS_851375-852796 62.5 7.8e-18 1
CP001924_1018 CDS_985093-983909 61.8 1.2e-17 1
CP001924_1331 CDS_1285876-1287054 49.6 3.6e-14 1
CP001924_1297 CDS_1242933-1241329 40.7 1.2e-11 1
CP001924_1273 CDS_1217206-1215461 40.7 1.2e-11 1
CP001924_0234 CDS_220367-218574 37.3 1.1e-10 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001924_0160 1/1 359 426 .. 1 87 [] 73.3 7e-21
CP001924_0555 1/1 632 697 .. 1 87 [] 72.8 9.5e-21
CP001924_1298 1/1 731 797 .. 1 87 [] 72.0 1.7e-20
CP001924_0150 1/1 830 895 .. 1 87 [] 70.1 5.5e-20
CP001924_1306 1/1 1036 1102 .. 1 87 [] 68.8 1.3e-19
CP001924_1312 1/1 488 554 .. 1 87 [] 66.6 5.6e-19
CP001924_0850 1/1 901 967 .. 1 87 [] 64.5 2.2e-18
CP001924_0883 1/1 246 310 .. 1 87 [] 62.5 7.8e-18
CP001924_1018 1/1 142 207 .. 1 87 [] 61.8 1.2e-17
CP001924_1331 1/1 168 233 .. 1 87 [] 49.6 3.6e-14
CP001924_1297 1/1 302 367 .. 1 87 [] 40.7 1.2e-11
CP001924_1273 1/1 362 427 .. 1 87 [] 40.7 1.2e-11
CP001924_0234 1/1 357 423 .. 1 87 [] 37.3 1.1e-10

Alignments of top-scoring domains:
CP001924_0160: domain 1 of 1, from 359 to 426: score 73.3, E = 7e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHELRTP+t++++++e+L+e +++s+++++
CP001924_0 359 VRRDFVANISHELRTPITSLKLLTETLQE---------GAASDPDVA 396

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++++i+ e++ l +L+ +l dls ie+g
CP001924_0 397 ----------AGFIDKIHLEVDKLAQLVTELSDLSAIESG 426

CP001924_0555: domain 1 of 1, from 632 to 697: score 72.8, E = 9.5e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e+ a+l+HEL++PLt+++g++el++e l+e+
CP001924_0 632 SLGELSAGLAHELNNPLTSVLGFSELIQE---------KILPEDL-- 667

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ +++i +ea+r ++i++lL+++r ++
CP001924_0 668 ----------RQDIQIISQEAQRAAEIIRNLLTFARRHEP 697

CP001924_1298: domain 1 of 1, from 731 to 797: score 72.0, E = 1.7e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e++a+++HE+++PLt+++g++elLle +++l+++
CP001924_1 731 AVGEMAAGIAHEINNPLTGVIGFSELLLE--------REDLPDDI-- 767

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l++i + ++r ++i ++L+++r ++
CP001924_1 768 ----------KANLKIINDGSQRAKEIIKRMLTFARQTTP 797

CP001924_0150: domain 1 of 1, from 830 to 895: score 70.1, E = 5.5e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +e++++l+HE+++PLt+I g++elLl+ el e
CP001924_0 830 SVGELASGLAHEINNPLTGIVGFSELLLM---------NELEESI-- 865

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e ++ti+rea r +++++lL+++r ++
CP001924_0 866 ----------KEDIQTIHREALRAAEIVRNLLTFARQHTP 895

CP001924_1306: domain 1 of 1, from 1036 to 1102: score 68.8, E = 1.3e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e++a+++HE+++PLt+++g+aelL + +++l+++
CP001924_1 1036 AVGEMAAGIAHEINNPLTGVIGFAELLAN--------RPDLPADI-- 1072

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +++i + + r +++ +lL+++r +
CP001924_1 1073 ----------QDSIKIINNGSLRVVEIVKRLLTFARQTRP 1102

CP001924_1312: domain 1 of 1, from 488 to 554: score 66.6, E = 5.6e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e++a+++HE+++PLt+++g++elL + +++l+e+
CP001924_1 488 AIGEMAAGIAHEINNPLTGVIGFSELLAA--------REDLPEDI-- 524

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l++i + ++r +++++lL+++r +
CP001924_1 525 ----------MADLQVINHGSQRVVEIVRRLLTFARQNKP 554

CP001924_0850: domain 1 of 1, from 901 to 967: score 64.5, E = 2.2e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e++a+++HE+++PLt+++g+a++L e +++l+++
CP001924_0 901 AVGEMAAGIAHEINNPLTGVIGFASILME--------REDLPADV-- 937

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e l++i + ++r +++ ++L+++r +
CP001924_0 938 ----------MEELQIINSGSQRVVEIVKRMLTFARQAKP 967

CP001924_0883: domain 1 of 1, from 246 to 310: score 62.5, E = 7.8e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++la+++HELRTPLt+I g+++ +l+ + +++
CP001924_0 246 SRQRLLADIAHELRTPLTVIEGTVDGMLD---------GVFAADT-- 281

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l ti++e+ l rLi dl+d+s +e+g
CP001924_0 282 -----------HHLTTIKEESATLTRLIKDLRDISLAESG 310

CP001924_1018: domain 1 of 1, from 142 to 207: score 61.8, E = 1.2e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++a+++HE++ PLt+I+g++e L + seeq
CP001924_1 142 SVGALTAGVAHEINSPLTSILGFSERLAR---------KCTSEEQ-- 177

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +e+i+ ea r + +n+l++++r ++
CP001924_1 178 ----------HRDIERIHTEALRAAKVVNNLRTFARSYEQ 207

CP001924_1331: domain 1 of 1, from 168 to 233: score 49.6, E = 3.6e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f+++l HEL+TPLt++++++elL + +l ee +
CP001924_1 168 QRITFTRALVHELKTPLTSMLATSELLSK----------NLAEEPN- 203

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y + ++ ++ l+ i++lLd++r e g
CP001924_1 204 ----------LSYMKCLYAGIQDLNLRIDELLDIARGEVG 233

CP001924_1297: domain 1 of 1, from 302 to 367: score 40.7, E = 1.2e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+++l HEL+TPLt +++ +e L els+ ++
CP001924_1 302 QRNYFMRALVHELKTPLTPLLASSEYLVS----------ELSDSTL- 337

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y + +++ a l++ i+dl+ l++ e g
CP001924_1 338 ----------LGYARNMQNGAINLNNKIDDLMNLAKGEIG 367

CP001924_1273: domain 1 of 1, from 362 to 427: score 40.7, E = 1.2e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ f+ +l HELRTPLt I++++++L + + +
CP001924_1 362 KRIYFTWALVHELRTPLTPIILASDALHS---------VAVDNKL-- 397

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++ i + a l+ i++lLdl+r e g
CP001924_1 398 ----------KSLVNNINNGASELNTRISELLDLARGEVG 427

CP001924_0234: domain 1 of 1, from 357 to 423: score 37.3, E = 1.1e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ l +l HE+RTPLt +++++++L + +e++ e
CP001924_0 357 KRQAHLKALVHEIRTPLTPLLAASDALVN--------VSEKGTEL-- 393

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++i++ ae l++ i dl +l+r g
CP001924_0 394 ----------YNLASSIREGAETLNSRIHDLIELERGKIG 423


Histogram of all scores:
score obs exp (one = represents 5 sequences)
----- --- ---
-15 1 0|=
-14 9 0|==
-13 33 1|*======
-12 97 32|======*=============
-11 171 167|=================================*=
-10 246 311|================================================== *
-9 266 321|====================================================== *
-8 231 240|===============================================*
-7 136 151|============================ *
-6 83 87|=================*
-5 64 47|=========*===
-4 28 25|====*=
-3 13 13|==*
-2 13 7|=*=
-1 7 3|*=
0 2 1|*
> 1 17 -|====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 165.2307
P(chi-square) = 2.691e-30

Total sequences searched: 1417

Whole sequence top hits:
tophits_s report:
Total hits: 13
Satisfying E cutoff: 13
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 13
Satisfying E cutoff: 13
Total memory: 26K


Acknowledgements:

This research is funded by:

Developed by: