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Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
7 projects found  

1 accessions found for Thermocrinis albus DSM 14484  

Data for CP001931  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001931.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001931_0284 CDS_288451-287483 56.1 5.8e-16 1
CP001931_0318 CDS_321811-323121 52.9 4.5e-15 1
CP001931_0581 CDS_558865-560592 39.5 3e-11 1
CP001931_0495 CDS_484377-486296 36.8 1.7e-10 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001931_0284 1/1 103 165 .. 1 87 [] 56.1 5.8e-16
CP001931_0318 1/1 227 293 .. 1 87 [] 52.9 4.5e-15
CP001931_0581 1/1 374 444 .. 1 87 [] 39.5 3e-11
CP001931_0495 1/1 415 480 .. 1 87 [] 36.8 1.7e-10

Alignments of top-scoring domains:
CP001931_0284: domain 1 of 1, from 103 to 165: score 56.1, E = 5.8e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++++ n++HEL+TPL+a+ +++e + + e+++
CP001931_0 103 LKRDLVENVAHELKTPLSAVTLLLERAAK----------ECPS---- 135

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++l+ ++++++Li+d+L l+r+e+g
CP001931_0 136 ----------SFAIHRALHRLQQMEKLIDDMLILARLESG 165

CP001931_0318: domain 1 of 1, from 227 to 293: score 52.9, E = 4.5e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+++ +H L+TPLt I+g +elL++ + ++ +
CP001931_0 227 WQIQFMRDFAHSLKTPLTYIKGQLELLQK---------GIYDPVKE- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l+ ++ ++ r+++Lin+lL+l r+e+
CP001931_0 264 ----------EEVLRNMQVQVGRMENLINRLLTLMRLESH 293

CP001931_0581: domain 1 of 1, from 374 to 444: score 39.5, E = 3e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + ++HE+++PLt I++++e+Ll+ a+ +e e++
CP001931_0 374 TWQDTVKRIAHEIKNPLTPISLNLEMLLR-----MAQKGEVCKEDM- 414

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l+++l+e+er+ ++ l+dl +++
CP001931_0 415 ----------EGLLKIMLEEVERIKGVVRHLRDLHYEREP 444

CP001931_0495: domain 1 of 1, from 415 to 480: score 36.8, E = 1.7e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+e + +++H+L++PL++I++ ae+L l ++++
CP001931_0 415 IAGEIAVSIAHQLNNPLASILASAEVLMS----------RLQDDTL- 450

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++++i + + r ++ ++ lLd+s g
CP001931_0 451 ----------KPLVQRIVDNTARASQTVRKLLDISGSKDG 480


Histogram of all scores:
score obs exp (one = represents 5 sequences)
----- --- ---
-15 1 0|=
-14 5 0|=
-13 23 1|*====
-12 72 36|=======*=======
-11 191 188|=====================================*=
-10 263 350|===================================================== *
-9 290 361|==========================================================*
-8 250 270|================================================== *
-7 196 170|=================================*======
-6 105 98|===================*=
-5 78 53|==========*=====
-4 48 28|=====*====
-3 33 15|==*====
-2 13 7|=*=
-1 5 4|*
0 7 2|*=
1 4 1|*
2 1 0|=
3 1 0|=
4 1 0|=
5 0 0|
> 6 6 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 124.0054
P(chi-square) = 7.771e-22

Total sequences searched: 1593

Whole sequence top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: