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4 accessions found for Natrialba magadii ATCC 43099  

Data for CP001932  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001932.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001932_3166 CDS_3331789-3333495 66.6 1.3e-18 1
CP001932_3247 CDS_3429833-3432349 60.3 8.5e-17 1
CP001932_3058 CDS_3210136-3212853 54.7 3.3e-15 1
CP001932_2012 CDS_2081579-2080146 54.7 3.3e-15 1
CP001932_2032 CDS_2105653-2102798 52.0 1.9e-14 1
CP001932_1276 CDS_1328273-1327137 50.1 6.4e-14 1
CP001932_0423 CDS_425937-424708 49.6 9e-14 1
CP001932_0314 CDS_312540-310171 49.1 1.3e-13 1
CP001932_3138 CDS_3307695-3305263 46.4 7e-13 1
CP001932_0160 CDS_178372-179430 31.2 1.4e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001932_3166 1/1 329 393 .. 1 87 [] 66.6 1.3e-18
CP001932_3247 1/1 600 668 .. 1 87 [] 60.3 8.5e-17
CP001932_3058 1/1 619 680 .. 1 87 [] 54.7 3.3e-15
CP001932_2012 1/1 266 328 .. 1 87 [] 54.7 3.3e-15
CP001932_2032 1/1 726 794 .. 1 87 [] 52.0 1.9e-14
CP001932_1276 1/1 147 215 .. 1 87 [] 50.1 6.4e-14
CP001932_0423 1/1 172 240 .. 1 87 [] 49.6 9e-14
CP001932_0314 1/1 566 634 .. 1 87 [] 49.1 1.3e-13
CP001932_3138 1/1 586 654 .. 1 87 [] 46.4 7e-13
CP001932_0160 1/1 152 215 .. 1 87 [] 31.2 1.4e-08

Alignments of top-scoring domains:
CP001932_3166: domain 1 of 1, from 329 to 393: score 66.6, E = 1.3e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f++ +sH+LR+PLt+ gy++l+le ++s++
CP001932_3 329 RLDKFASIVSHDLRNPLTVADGYLDLALE----------DASDDI-- 363

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +le i+++ r+++Li+d+L+++r e+
CP001932_3 364 ----------RPALEEIQDAHGRMQQLIEDVLTMARGETV 393

CP001932_3247: domain 1 of 1, from 600 to 668: score 60.3, E = 8.5e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ ++sH+L PL ++ y++lL++++ +el+e+
CP001932_3 600 RLEQFAYAASHDLQEPLRMVSSYLDLLETRYA------DELDEDA-- 638

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+++ + + aer++++in lL++srie++
CP001932_3 639 ----------QEFIDYAVDGAERMRQMINGLLEFSRIETQ 668

CP001932_3058: domain 1 of 1, from 619 to 680: score 54.7, E = 3.3e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f++ +sH+LR+PL +gy++l+ e e
CP001932_3 619 RLDAFARIVSHDLRNPLGIAQGYLDLIDE-------------TES-- 650

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
eyl t++r+++r++++i d+L ++r ++
CP001932_3 651 ----------LEYLPTAKRSLDRMEAIIHDVLAIARDGTW 680

CP001932_2012: domain 1 of 1, from 266 to 328: score 54.7, E = 3.3e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++sef+ ++sH+LR PL+a +gy+el+++ e+++
CP001932_2 266 RLSEFTGTVSHDLRGPLAAAMGYLELARA----------EADD---- 298

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l+ + + +r+ Li+dlL l+r+++
CP001932_2 299 ----------VSFLDDVAAAHQRMKTLIDDLLVLARAGNV 328

CP001932_2032: domain 1 of 1, from 726 to 794: score 52.0, E = 1.9e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ ++sH+L PL ++ y++l+++++ +++ +e+
CP001932_2 726 RLEQFAYAASHDLQEPLRMVSSYLQLIERRY------SDAFDEDG-- 764

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+le + + aer++r+i+ lL +sr e+
CP001932_2 765 ----------EEFLEYAVDGAERMRRMIDGLLAYSRVETR 794

CP001932_1276: domain 1 of 1, from 147 to 215: score 50.1, E = 6.4e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ ++sH+L PL ++ y++l++ ++ + +e+
CP001932_1 147 SLEQFAYAASHDLQEPLRMVSSYLQLIEQRYG------DGFDEDG-- 185

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+le +++ a+r++++i+ lL++sri+++
CP001932_1 186 ----------EEFLEFAIDGADRMRSMIDALLEYSRIDTE 215

CP001932_0423: domain 1 of 1, from 172 to 240: score 49.6, E = 9e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f++++sH+L PL I+ y++lL+e++ +el+e+
CP001932_0 172 QLDHFASTVSHDLQEPLRMISRYLQLLEERYG------DELDEDA-- 210

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ + + a+r+++++ lL++s+i+++
CP001932_0 211 ----------TDFIDYAVDGADRMQAMVTGLLEYSKIDTQ 240

CP001932_0314: domain 1 of 1, from 566 to 634: score 49.1, E = 1.3e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ ++sH+L PL + y++l+ +++ +el+ +
CP001932_0 566 RLEQFAYAASHDLQEPLRMVTSYLQLIDRRYT------DELDKDG-- 604

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e++e +++ a+r++++i+ lL++srie+
CP001932_0 605 ----------EEFIEFAIDGADRMRNMIEGLLEYSRIETR 634

CP001932_3138: domain 1 of 1, from 586 to 654: score 46.4, E = 7e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ ++sH+L PL ++ y++l++ ++ +e +e+
CP001932_3 586 RLEQFAYAASHDLQEPLRMVSSYLQLIEQRYG------EEFDEDG-- 624

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+le + + a+r++r+i+ lL +sr e+
CP001932_3 625 ----------EEFLEFAVDGADRMRRMIDGLLAYSRVETR 654

CP001932_0160: domain 1 of 1, from 152 to 215: score 31.2, E = 1.4e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ef++ lsH+L +++ +gy+ L e+ ++ + ++
CP001932_0 152 RLTEFASVLSHDLQSLVNVAQGYTMELSEG--------SDHDQDE-- 188

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le i++++ r+++L +d+L+l+ +++
CP001932_0 189 -------------LEEIQDALTRIQELHDDMLTLTHYDEP 215


Histogram of all scores:
score obs exp (one = represents 11 sequences)
----- --- ---
-15 4 0|=
-14 22 0|==
-13 58 2|*=====
-12 212 81|=======*============
-11 377 421|=================================== *
-10 595 782|======================================================= *
-9 648 808|==========================================================*
-8 557 605|=================================================== *
-7 433 381|==================================*=====
-6 250 219|===================*===
-5 176 120|==========*=====
-4 84 64|=====*==
-3 55 34|===*=
-2 26 17|=*=
-1 22 9|*=
0 10 4|*
1 8 2|*
2 3 1|*
3 3 0|=
4 2 0|=
5 1 0|=
> 6 13 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 371.8886
P(chi-square) = 0

Total sequences searched: 3559

Whole sequence top hits:
tophits_s report:
Total hits: 10
Satisfying E cutoff: 10
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 10
Satisfying E cutoff: 10
Total memory: 24K


Acknowledgements:

This research is funded by:

Developed by: