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4 accessions found for Natrialba magadii ATCC 43099  

Data for CP001933  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001933.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001933_0335 CDS_360795-363173 52.8 1.1e-15 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001933_0335 1/1 566 634 .. 1 87 [] 52.8 1.1e-15

Alignments of top-scoring domains:
CP001933_0335: domain 1 of 1, from 566 to 634: score 52.8, E = 1.1e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ ++sH+L PL ++ y++l++ ++ ++l+++
CP001933_0 566 RLEQFAYAASHDLQEPLRMVSSYLQLIEQRYA------DKLDADG-- 604

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+le + + aer++++i+ lL++sr e+
CP001933_0 605 ----------EEFLEYAVDGAERMRAMIDGLLQYSRVESR 634


Histogram of all scores:
score obs exp (one = represents 2 sequences)
----- --- ---
-14 5 0|===
-13 9 0|=====
-12 18 7|===*=====
-11 39 40|===================*
-10 53 74|=========================== *
-9 63 77|================================ *
-8 52 57|========================== *
-7 38 36|=================*=
-6 24 20|=========*==
-5 16 11|=====*==
-4 9 6|==*==
-3 6 3|=*=
-2 2 1|*
-1 2 0|=
> 0 4 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 26.6234
P(chi-square) = 0.000821

Total sequences searched: 340

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: