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4 accessions found for Natrialba magadii ATCC 43099  

Data for CP001934  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001934.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001934_0139 CDS_165451-166593 53.4 4.6e-16 1
CP001934_0091 CDS_106939-108858 50.3 3.4e-15 1
CP001934_0134 CDS_158057-158863 48.9 8.7e-15 1
CP001934_0123 CDS_144135-146495 47.5 2.2e-14 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001934_0139 1/1 159 227 .. 1 87 [] 53.4 4.6e-16
CP001934_0091 1/1 418 486 .. 1 87 [] 50.3 3.4e-15
CP001934_0134 1/1 44 112 .. 1 87 [] 48.9 8.7e-15
CP001934_0123 1/1 567 635 .. 1 87 [] 47.5 2.2e-14

Alignments of top-scoring domains:
CP001934_0139: domain 1 of 1, from 159 to 227: score 53.4, E = 4.6e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ ++sH+L PL + gy+ lL++++ +++l+e+
CP001934_0 159 RLQQFAYAASHDLQEPLRMVTGYLRLLENRY------SDDLDEDA-- 197

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e++e + + aer++++i+ lL++sr e++
CP001934_0 198 ----------EEFIEFAVDGAERMEAMIEGLLTYSRVETQ 227

CP001934_0091: domain 1 of 1, from 418 to 486: score 50.3, E = 3.4e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ ++sH+L PL ++ y++l++ ++ el+++
CP001934_0 418 RLEQFAYAASHDLQEPLRMVSSYLQLIESRYA------NELGDDG-- 456

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+le +++ a+r++++i+ lL++sr +++
CP001934_0 457 ----------EEFLEFAIDGADRMREMIDALLEYSRVDTQ 486

CP001934_0134: domain 1 of 1, from 44 to 112: score 48.9, E = 8.7e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ ++sH+L PL +++y++l+ +++ +++ +e+
CP001934_0 44 RLEQFAYAASHDLQEPLRMVSTYLQLIDRRY------RDAFDEDG-- 82

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+le +++ a+r++++i+ lL +sr e+
CP001934_0 83 ----------EEFLEFAIDGADRMRSMIEGLLAYSRVETR 112

CP001934_0123: domain 1 of 1, from 567 to 635: score 47.5, E = 2.2e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ ++sH+L PL + y++lL ++ +++ e+
CP001934_0 567 RLEQFAYAVSHDLQEPLRMVTSYLQLLDQRY-------GDALGEDG- 605

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e++e + + aer++++i+ lL++sr e++
CP001934_0 606 ----------EEFIEFAVDGAERMRAMIDGLLEYSRVETQ 635


Histogram of all scores:
score obs exp (one = represents 1 sequences)
----- --- ---
-14 3 0|===
-13 5 0|=====
-12 11 5|====*======
-11 28 25|========================*===
-10 31 48|=============================== *
-9 35 49|=================================== *
-8 42 37|====================================*=====
-7 17 23|================= *
-6 20 13|============*=======
-5 10 7|======*===
-4 6 3|==*===
-3 2 2|=*
-2 4 1|*===
-1 0 0|
> 0 5 -|=====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 24.2409
P(chi-square) = 0.001033

Total sequences searched: 219

Whole sequence top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: