Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
35 projects found  

1 accessions found for Desulfurivibrio alkaliphilus AHT2  

Data for CP001940  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001940.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001940_0627 CDS_749308-753099 100.3 2.8e-28 1
CP001940_1600 CDS_1906561-1904138 96.7 3e-27 1
CP001940_1321 CDS_1587806-1586013 93.3 2.7e-26 1
CP001940_0719 CDS_874127-872595 92.7 4e-26 1
CP001940_1546 CDS_1843042-1844988 91.2 1.1e-25 1
CP001940_0090 CDS_111585-113570 91.1 1.2e-25 1
CP001940_1311 CDS_1573430-1569543 81.7 5.5e-23 1
CP001940_1756 CDS_2079299-2077809 72.6 2e-20 1
CP001940_0641 CDS_773863-775086 70.9 6e-20 1
CP001940_1340 CDS_1609364-1610629 65.6 2e-18 1
CP001940_2392 CDS_2848334-2846631 63.7 6.6e-18 1
CP001940_0600 CDS_722552-720747 62.4 1.6e-17 1
CP001940_2445 CDS_2914062-2912860 61.7 2.5e-17 1
CP001940_0265 CDS_314136-315995 60.1 6.9e-17 1
CP001940_0395 CDS_472935-474794 58.9 1.6e-16 1
CP001940_1834 CDS_2169480-2170949 57.2 4.7e-16 1
CP001940_1452 CDS_1728081-1726627 56.8 6e-16 1
CP001940_0277 CDS_324872-327175 56.2 9.1e-16 1
CP001940_0945 CDS_1154250-1155980 55.9 1.1e-15 1
CP001940_0048 CDS_60074-61948 55.1 1.9e-15 1
CP001940_0640 CDS_770612-772993 52.8 8.1e-15 1
CP001940_1300 CDS_1558005-1559657 52.3 1.1e-14 1
CP001940_2104 CDS_2506031-2503302 52.0 1.4e-14 1
CP001940_0668 CDS_809201-811402 51.9 1.5e-14 1
CP001940_0752 CDS_912033-913973 50.4 3.9e-14 1
CP001940_0330 CDS_395200-397449 49.4 7.7e-14 1
CP001940_1922 CDS_2274718-2276889 48.1 1.8e-13 1
CP001940_1088 CDS_1320324-1318594 46.5 4.9e-13 1
CP001940_0803 CDS_975214-973340 45.8 7.7e-13 1
CP001940_2529 CDS_2998142-2999728 45.8 8e-13 1
CP001940_1486 CDS_1768110-1766191 43.4 3.7e-12 1
CP001940_0635 CDS_761452-763137 43.3 4.1e-12 1
CP001940_0224 CDS_267021-264487 42.6 6.4e-12 1
CP001940_0403 CDS_488107-485750 42.6 6.5e-12 1
CP001940_0861 CDS_1039740-1041473 41.4 1.4e-11 1
CP001940_0978 CDS_1189675-1192221 40.6 2.4e-11 1
CP001940_2345 CDS_2788043-2789644 39.9 3.8e-11 1
CP001940_1342 CDS_1611099-1612661 38.9 7e-11 1
CP001940_1924 CDS_2280052-2278148 38.8 7.7e-11 1
CP001940_1173 CDS_1409768-1408671 38.5 9.1e-11 1
CP001940_0228 CDS_270278-271885 38.4 9.6e-11 1
CP001940_2453 CDS_2920957-2922726 38.4 9.8e-11 1
CP001940_1358 CDS_1632026-1629585 38.2 1.1e-10 1
CP001940_0637 CDS_764789-767242 36.4 3.7e-10 1
CP001940_0663 CDS_802697-800553 35.1 8.3e-10 1
CP001940_2052 CDS_2429737-2431212 33.5 2.5e-09 1
CP001940_2511 CDS_2978246-2975550 33.4 2.5e-09 1
CP001940_0916 CDS_1119249-1121168 31.8 7.4e-09 1
CP001940_0718 CDS_872598-871006 31.4 9.7e-09 2
CP001940_0734 CDS_889710-887599 30.2 2.1e-08 1
CP001940_1596 CDS_1898679-1897315 27.6 1.1e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001940_0627 1/1 542 607 .. 1 87 [] 100.3 2.8e-28
CP001940_1600 1/1 301 366 .. 1 87 [] 96.7 3e-27
CP001940_1321 1/1 208 273 .. 1 87 [] 93.3 2.7e-26
CP001940_0719 1/1 268 336 .. 1 87 [] 92.7 4e-26
CP001940_1546 1/1 409 476 .. 1 87 [] 91.2 1.1e-25
CP001940_0090 1/1 171 236 .. 1 87 [] 91.1 1.2e-25
CP001940_1311 1/1 570 638 .. 1 87 [] 81.7 5.5e-23
CP001940_1756 1/1 271 339 .. 1 87 [] 72.6 2e-20
CP001940_0641 1/1 169 235 .. 1 87 [] 70.9 6e-20
CP001940_1340 1/1 199 267 .. 1 87 [] 65.6 2e-18
CP001940_2392 1/1 339 405 .. 1 87 [] 63.7 6.6e-18
CP001940_0600 1/1 385 451 .. 1 87 [] 62.4 1.6e-17
CP001940_2445 1/1 146 212 .. 1 87 [] 61.7 2.5e-17
CP001940_0265 1/1 388 454 .. 1 87 [] 60.1 6.9e-17
CP001940_0395 1/1 387 453 .. 1 87 [] 58.9 1.6e-16
CP001940_1834 1/1 271 336 .. 1 87 [] 57.2 4.7e-16
CP001940_1452 1/1 267 334 .. 1 87 [] 56.8 6e-16
CP001940_0277 1/1 521 589 .. 1 87 [] 56.2 9.1e-16
CP001940_0945 1/1 360 426 .. 1 87 [] 55.9 1.1e-15
CP001940_0048 1/1 248 314 .. 1 87 [] 55.1 1.9e-15
CP001940_0640 1/1 415 481 .. 1 87 [] 52.8 8.1e-15
CP001940_1300 1/1 322 398 .. 1 87 [] 52.3 1.1e-14
CP001940_2104 1/1 540 606 .. 1 87 [] 52.0 1.4e-14
CP001940_0668 1/1 492 560 .. 1 87 [] 51.9 1.5e-14
CP001940_0752 1/1 418 490 .. 1 87 [] 50.4 3.9e-14
CP001940_0330 1/1 523 594 .. 1 87 [] 49.4 7.7e-14
CP001940_1922 1/1 497 565 .. 1 87 [] 48.1 1.8e-13
CP001940_1088 1/1 358 424 .. 1 87 [] 46.5 4.9e-13
CP001940_0803 1/1 402 470 .. 1 87 [] 45.8 7.7e-13
CP001940_2529 1/1 156 222 .. 1 87 [] 45.8 8e-13
CP001940_1486 1/1 264 330 .. 1 87 [] 43.4 3.7e-12
CP001940_0635 1/1 328 391 .. 1 87 [] 43.3 4.1e-12
CP001940_0224 1/1 469 535 .. 1 87 [] 42.6 6.4e-12
CP001940_0403 1/1 417 483 .. 1 87 [] 42.6 6.5e-12
CP001940_0861 1/1 196 262 .. 1 87 [] 41.4 1.4e-11
CP001940_0978 1/1 470 536 .. 1 87 [] 40.6 2.4e-11
CP001940_2345 1/1 294 359 .. 1 87 [] 39.9 3.8e-11
CP001940_1342 1/1 149 215 .. 1 87 [] 38.9 7e-11
CP001940_1924 1/1 423 488 .. 1 87 [] 38.8 7.7e-11
CP001940_1173 1/1 142 203 .. 1 82 [. 38.5 9.1e-11
CP001940_0228 1/1 303 372 .. 1 87 [] 38.4 9.6e-11
CP001940_2453 1/1 349 422 .. 1 87 [] 38.4 9.8e-11
CP001940_1358 1/1 581 654 .. 1 87 [] 38.2 1.1e-10
CP001940_0637 1/1 446 512 .. 1 87 [] 36.4 3.7e-10
CP001940_0663 1/1 478 546 .. 1 87 [] 35.1 8.3e-10
CP001940_2052 1/1 249 318 .. 1 87 [] 33.5 2.5e-09
CP001940_2511 1/1 531 601 .. 1 87 [] 33.4 2.5e-09
CP001940_0916 1/1 280 346 .. 1 87 [] 31.8 7.4e-09
CP001940_0734 1/1 335 401 .. 1 87 [] 30.2 2.1e-08
CP001940_0718 2/2 69 109 .. 6 66 .. 28.4 6.6e-08
CP001940_1596 1/1 182 284 .. 1 87 [] 27.6 1.1e-07

Alignments of top-scoring domains:
CP001940_0627: domain 1 of 1, from 542 to 607: score 100.3, E = 2.8e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHE+RTP++a++g+++lL tel+eeq
CP001940_0 542 AKSEFLANMSHEIRTPMNAVIGLSQLLAQ---------TELNEEQ-- 577

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ +++i+++++ ll +ind+Ld+s+ie+g
CP001940_0 578 ----------RDQVRKIHQSSRMLLGIINDILDFSKIESG 607

CP001940_1600: domain 1 of 1, from 301 to 366: score 96.7, E = 3e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHE+RTP+++++g++ lLl+ ++l+e+q
CP001940_1 301 AKSDFLAHMSHEIRTPMNGVIGMTALLLA---------GDLDEQQ-- 336

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r y +i+ ++e llr+ind+Ldl++ieag
CP001940_1 337 ----------RHYAGVIKASGEALLRIINDILDLAKIEAG 366

CP001940_1321: domain 1 of 1, from 208 to 273: score 93.3, E = 2.7e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTP++aI g+a+lL + t l+ q
CP001940_1 208 LKSEFLANMSHELRTPMNAITGFAQLLAD---------TSLDTTQ-- 243

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ey +ti++++ ll+Lind+Ldl++ieag
CP001940_1 244 ----------QEYCRTIRQSSATLLALINDILDLAKIEAG 273

CP001940_0719: domain 1 of 1, from 268 to 336: score 92.7, E = 4e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+flan+sHELRTPL+aI+gy+elLle++ +e++e ++
CP001940_0 268 AKSRFLANMSHELRTPLNAIIGYSELLLEDA-------SEWGEWEI- 306

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e le+i++++++ll Li+d+Ld+s+ieag
CP001940_0 307 ----------SEDLEKIKSAGQHLLMLISDILDISKIEAG 336

CP001940_1546: domain 1 of 1, from 409 to 476: score 91.2, E = 1.1e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHEL+TP+t+I g+ae+Ll+ ++l+e++++
CP001940_1 409 LRRDFVANVSHELKTPITSIEGFAETLLD---------GALDEPEQA 446

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+++ +il++++rl ++i+dlL lsrie++
CP001940_1 447 ----------RRFTTIILQQSRRLHAIIEDLLALSRIEQE 476

CP001940_0090: domain 1 of 1, from 171 to 236: score 91.1, E = 1.2e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aksefla++sHE+RTPLt+I+g+a+lL + t+l++eq
CP001940_0 171 AKSEFLASMSHEIRTPLTTILGMADLLDK---------TPLGAEQ-- 206

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y+ + ++e ll+Lin +Ldls+ieag
CP001940_0 207 ----------RQYVWASRAAGENLLDLINGILDLSKIEAG 236

CP001940_1311: domain 1 of 1, from 570 to 638: score 81.7, E = 5.5e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++I+ ++++L + + ++l + q
CP001940_1 570 YKSEFLANMSHELRTPLNSILILSQMLAT------NKQGNLLPRQ-- 608

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
ey ti +++ ll+Lin++Ldls+ieag
CP001940_1 609 ----------LEYATTINNSGSDLLNLINEVLDLSKIEAG 638

CP001940_1756: domain 1 of 1, from 271 to 339: score 72.6, E = 2e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks f+a++sHELRTPL++I+ +++Ll+++ +e + q
CP001940_1 271 LKSAFFADMSHELRTPLASIKEGTHILLDRVG------GEINNHQ-- 309

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l +i +e++rl + +n lLdl+r+eag
CP001940_1 310 ----------QRILLIISQESDRLINRVNSLLDLARMEAG 339

CP001940_0641: domain 1 of 1, from 169 to 235: score 70.9, E = 6e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ksef+ n+sHELRTPL+ I+g++e++l+ +e+ +++
CP001940_0 169 LKSEFIGNMSHELRTPLNQIIGLSEVMLD--------QPEMLADH-- 205

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r yl+ti ++a l+ +n++L+ls++++g
CP001940_0 206 ----------RNYLQTIVKAAWGLNGTLNNVLELSQLDSG 235

CP001940_1340: domain 1 of 1, from 199 to 267: score 65.6, E = 2e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+ ++sH+LR PL +I g++++Lle++ +++ +++
CP001940_1 199 ELDAFAYSISHDLRAPLRGIDGFSQALLEDY-------HDQLDDTG- 237

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl++++ r+ +Li+d+L+lsr+ g
CP001940_1 238 ----------QDYLRRVRAGCSRMGHLIDDMLQLSRLSRG 267

CP001940_2392: domain 1 of 1, from 339 to 405: score 63.7, E = 6.6e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +++ a+++HEL+TPL++I+gya lL + d++l++ q
CP001940_2 339 AIGQLSAGVAHELNTPLASILGYARLLIK--------DDNLTSAQ-- 375

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e le+i ++++r + +i lL ++r +
CP001940_2 376 ----------QERLEIIAEQTRRSSTIIKALLSFAREARQ 405

CP001940_0600: domain 1 of 1, from 385 to 451: score 62.4, E = 1.6e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++a+++HE+R+PL++I+g+a lL ++ +++++
CP001940_0 385 ALGKMAAGVAHEIRNPLSSIKGLATLLAS--------RAGQNPPE-- 421

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e + + e+er +r i++lLd++r +
CP001940_0 422 ----------SETARLLVGEVERVNRSISELLDFARPQPL 451

CP001940_2445: domain 1 of 1, from 146 to 212: score 61.7, E = 2.5e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++++ a+l+HE+++PL++Irg+ae+ l+e+ + + +
CP001940_2 146 ALGRLSASLAHEIKNPLSSIRGTAEIFLDEF--------PPGHPR-- 182

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re++e++l+e+ rl++ ++ +L +sr +
CP001940_2 183 ----------REFVEILLKETSRLNATVDKVLGYSRGQRA 212

CP001940_0265: domain 1 of 1, from 388 to 454: score 60.1, E = 6.9e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++a+l+HE+++PL I+ y++l ++ ++ls+
CP001940_0 388 AMGQLVAGLAHEINNPLGIIICYVDLVKR--------QPNLSPRA-- 424

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ le+i ++a+ + r++ dlLd++r ++
CP001940_0 425 ----------LQDLEVIGKQARGCKRIVGDLLDFARSGES 454

CP001940_0395: domain 1 of 1, from 387 to 453: score 58.9, E = 1.6e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++a+l+HE+++PL++I+ e+L +el + s ++
CP001940_0 387 VVGQMAAGLAHEIKNPLAGIKVSMEVLSNEL--------DISQQD-- 423

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e++++i +e++r+++L+++lL ++r +
CP001940_0 424 ----------KEIFHRIVSEVQRIENLLRNLLNYARPPKP 453

CP001940_1834: domain 1 of 1, from 271 to 336: score 57.2, E = 4.7e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++a+++HEL TPL+ + g a+ +l+ +s+e
CP001940_1 271 AIGGLAAGVAHELGTPLSLVAGKAQRMLR---------RQQSPEN-- 306

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++ i++++er+++++++lLd+ r ++
CP001940_1 307 ----------AAAFQEIRQAVERMSHIVRQLLDFGRNNQP 336

CP001940_1452: domain 1 of 1, from 267 to 334: score 56.8, E = 6e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++a++sHE+++PL Ir +a +L +++ +e++ +
CP001940_1 267 TLGRMVASVSHEIKNPLGIIRSTAAILGKRVK------QEAPGNE-- 305

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e+i +e+ rl+ +++++Ld++r ++
CP001940_1 306 -----------HLAEIIVSETGRLDGIVREFLDFARPQTL 334

CP001940_0277: domain 1 of 1, from 521 to 589: score 56.2, E = 9.1e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+ ++sH+L+ PL +I gy+ lLl+++ +e+ +e+
CP001940_0 521 ELEAFTYSVSHDLKAPLRGIEGYSRLLLRDY-------QEQLDEDG- 559

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r ++ i r +e++++Li+ lL +sr+e
CP001940_0 560 ----------RLLVGYICRGVEQMQELIEALLAYSRLERR 589

CP001940_0945: domain 1 of 1, from 360 to 426: score 55.9, E = 1.1e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e++a+++HE+R+PL+aI+g ++lL + + + q
CP001940_0 360 AVGEMAAGVAHEFRNPLAAISGSTQLLAQ--------RLQKQPGQ-- 396

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l +i re +rl++ i ++L + r ++
CP001940_0 397 ----------EKLLAIITRECDRLEAAIKNFLLFCRPATP 426

CP001940_0048: domain 1 of 1, from 248 to 314: score 55.1, E = 1.9e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++ +++H++++ Lt I+gy+el+++ + ++eq
CP001940_0 248 AVGTLAGGVAHDFNNILTPIIGYCELAKM---------QLSPAEQE- 284

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +e il++a+r ++L++++L++sr +++
CP001940_0 285 ----------KMQVEEILQAARRARDLVQQILTFSRRQEQ 314

CP001940_0640: domain 1 of 1, from 415 to 481: score 52.8, E = 8.1e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++a+++H++++ Lt+++ +a l ++ ++ +e
CP001940_0 415 AVGTLAAGVAHDFNNILTSLISFATLVKR--------RHRDDEVS-- 451

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+ il++a+r +L + lL +sr ++
CP001940_0 452 ----------QDYLQEILDSARRAAELTRSLLAYSRKQQI 481

CP001940_1300: domain 1 of 1, from 322 to 398: score 52.3, E = 1.1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+f+a +sHELRTPLt+++g e L ++l + l+ ++ +
CP001940_1 322 RKSDFIARASHELRTPLTSVKGGMEYLTAKL-------ASLDRDTGQ 361

peLR..ledpeyreyletilreaerllrLindlLdlsrieag<-*
R++l ++l+ i++ ++rl r++n +Ld++ ie g
CP001940_1 362 ACNRdeL-----LDFLKLIRNNTDRLIRMVNTMLDIEHIEMG 398

CP001940_2104: domain 1 of 1, from 540 to 606: score 52.0, E = 1.4e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++a+++H++++ Lt+I+ y+el+l+ ++ s++ +
CP001940_2 540 AVGTLAAGIAHDFNNILTGILSYSELILR---------GNTSDPAL- 576

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ +++il+ ++r L ++lL +sr ++
CP001940_2 577 ----------RDDISRILELGRRGAGLTRQLLAFSREQEA 606

CP001940_0668: domain 1 of 1, from 492 to 560: score 51.9, E = 1.5e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+ ++sH+LR+PL ++gy++lL ++l + ls+e+
CP001940_0 492 DLEQFAYAASHDLRQPLRMVQGYLQLLVRRLG------SRLSSEE-- 530

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ey+ + + a+r++++i lL +sr +
CP001940_0 531 ----------QEYIFYATDGARRMDEMIVGLLNFSRVGRK 560

CP001940_0752: domain 1 of 1, from 418 to 490: score 50.4, E = 3.9e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e++a+l HE+R+PL++Ir++++lL+ + l ++
CP001940_0 418 AVGELTAGLTHEMRNPLSSIRMNTQLLQQ-------STRLLQQGLQR 457

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
peL e+ e+ +++a rl++++ndlL + + +
CP001940_0 458 PEL-------VELAEISRQQALRLEKMLNDLLGYGKPLTL 490

CP001940_0330: domain 1 of 1, from 523 to 594: score 49.4, E = 7.7e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e +++++HE ++PLt I++ a+ L++++ +++ + + e
CP001940_0 523 AWREVARSIAHEVKNPLTPIQLSAQRLRKKY----LERLAGDNEV-- 563

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ti++++e l+rL++++ ++r+ a
CP001940_0 564 ---------FDLCTRTIISQVEELQRLVSEFSNFARMPAI 594

CP001940_1922: domain 1 of 1, from 497 to 565: score 48.1, E = 1.8e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ ++sH++R+PL ++g++elL ++l + l++ +
CP001940_1 497 ELEQFAYAVSHDMRQPLRMVSGHLELLAKQLG------PRLDDTE-- 535

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l+ +l+ a+rl+++i lL++sr +
CP001940_1 536 ----------AQSLHFALDGARRLDQMIVALLEYSRVGRK 565

CP001940_1088: domain 1 of 1, from 358 to 424: score 46.5, E = 4.9e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++a+++HE+++P+ +Ir ++ L++ +++l + +
CP001940_1 358 AVGKLAASIAHEFNNPICGIRNVLQGLQR--------RQTLAAGD-- 394

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ + re +r rL +dl + r +
CP001940_1 395 ----------HDLVAMAVRECDRVARLTSDLQSFNRPTSS 424

CP001940_0803: domain 1 of 1, from 402 to 470: score 45.8, E = 7.7e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ +sH+L PL +I + + Ll + + l+
CP001940_0 402 ELQDFAHIASHDLQEPLRTIVSFGDRLLL------KHADQLDQRG-- 440

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+yle+i+ +a r+++Li+dlL +sr +
CP001940_0 441 ----------RDYLERIQGAAIRMRQLIEDLLNYSRVTTR 470

CP001940_2529: domain 1 of 1, from 156 to 222: score 45.8, E = 8e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++ +++H++++ LtaI gy++l+l +++ +
CP001940_2 156 AIGNLAGGIAHDFNNILTAIGGYVQLILL---------KSGNDQRI- 192

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + ++ +++r +L+++lL++sr +
CP001940_2 193 ----------SQDADQVRAAIKRATDLVSQLLTFSRQTEH 222

CP001940_1486: domain 1 of 1, from 264 to 330: score 43.4, E = 3.7e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++ +++H++++ LtaI+gy+++ + ++ +e +
CP001940_1 264 SVGTLAGGIAHDFNNLLTAIIGYCQISQL---------SPSADEAL- 300

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r le i +++r +L + lL +sr ++
CP001940_1 301 ----------RGNLEQIMAASKRGAHLTQGLLLFSRKQSS 330

CP001940_0635: domain 1 of 1, from 328 to 391: score 43.3, E = 4.1e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++HE+++ +taI+++a+l++ + ++e+
CP001940_0 328 AVGRLAGGIAHEFNNLMTAIIANAHLAKS--------KQGPDAEE-- 364

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le i+ +++r +L ++lL ++r ++
CP001940_0 365 -------------LEEIEVAGKRAAELTRQLLAFARKQSI 391

CP001940_0224: domain 1 of 1, from 469 to 535: score 42.6, E = 6.4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ ++ +++H++++ L++I+gya++L+ l++e+ l
CP001940_0 469 SMGLLAGGVAHDFNNKLAVIIGYAQVLQL----------RLPPEDPL 505

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + i+ +++r +L+++lL ++r ++
CP001940_0 506 ----------QGEVGEIITAGRRSADLVRQLLAFARKQTI 535

CP001940_0403: domain 1 of 1, from 417 to 483: score 42.6, E = 6.5e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ ++a+++H++++ LtaI+g++el++ l++++++
CP001940_0 417 SLGVLAAGIAHDFNNILTAIMGNLELARY----------LLGPQHQA 453

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++e ++++r + L ++lL+++r +a+
CP001940_0 454 ----------SNLIEEGTKASQRAQGLTQQLLTFARGGAP 483

CP001940_0861: domain 1 of 1, from 196 to 262: score 41.4, E = 1.4e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ ++ +++H++++ Lt I+ +a++++ ++++ + +
CP001940_0 196 ALGILAGGIAHDFNNILTPILINAQMAKL---------EARDNPIL- 232

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l+ i++++er +Li+++Ld+ r +
CP001940_0 233 ----------EQSLQQIEQATERAGALIQQILDFNRQGKH 262

CP001940_0978: domain 1 of 1, from 470 to 536: score 40.6, E = 2.4e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ L +I+gy++l+l+ ++eq+
CP001940_0 470 AIGRLAGGVAHDFNNKLQTILGYTDLALD---------VVNPDEQL- 506

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l+ ++ +a + +L ++lL ++r ++
CP001940_0 507 ----------HKDLKEVRTAAVQSADLTRQLLAFARRQTI 536

CP001940_2345: domain 1 of 1, from 294 to 359: score 39.9, E = 3.8e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++++++HE+ +PL+ I + ++++++ +el+e
CP001940_2 294 SIGTLASGVAHEILNPLNIIGTIVQVMQM---------EELPEII-- 329

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e l+ + +++r ++ n l+ +s +
CP001940_2 330 ----------SEQLDEVMVQIRRATKITNSLRMFSHRGKA 359

CP001940_1342: domain 1 of 1, from 149 to 215: score 38.9, E = 7e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++ +++H++++ Lt+++gyael l +l +e + +
CP001940_1 149 AIGALAGGVAHDFNNILTVVKGYAELGLLRL-------QESQPGH-- 186

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e + il++a+r +L ++lL ++r ++
CP001940_1 187 -----------EEFAGILEAAQRSTDLTRQLLAFARKQTA 215

CP001940_1924: domain 1 of 1, from 423 to 488: score 38.8, E = 7.7e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++a l H +R+P+t+I g + +L++ + ++e
CP001940_1 423 AIGQMAAQLVHTIRNPITSIGGVSRILEK----------KSDDES-- 457

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +y+++i re+ rl++ +n+l d+
CP001940_1 458 ---------WGKYIKVITRETARLESTLNELFDFVSQVKL 488

CP001940_1173: domain 1 of 1, from 142 to 203: score 38.5, E = 9.1e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a e++ +ls ELR+PL ++ +ya++L++ + ++++
CP001940_1 142 AIKELAVSLSQELRNPLGGLELYASMLER---------DLGDDPD-- 177

peLRledpeyreyletilreaerllrLindlLdls<-*
yr+++ ++l +++ +++L++++L+++
CP001940_1 178 ---------YRRITGRMLAAIKTMNHLLDNVLTFA 203

CP001940_0228: domain 1 of 1, from 303 to 372: score 38.4, E = 9.6e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ +a+++HE+R+PL++I + +L+ +++ ++
CP001940_0 303 SLGRVAAGIAHEIRNPLSGINISLTTLRQ-------IYHSPQHRDQ- 341

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++++++ ++ +++ + +++d+s+ ++
CP001940_0 342 ---------VEDIFRRLATASAKIEAVVKRVMDFSKPGQL 372

CP001940_2453: domain 1 of 1, from 349 to 422: score 38.4, E = 9.8e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++a+++HE+++PL+ I a lL + l + agd++ + e++
CP001940_2 349 SLGRLAAGVAHEINNPLAIINEKAGLLADLLTR--AGDAPPPKEKL- 392

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+i+r++ r+ + ++lL ++r ++
CP001940_2 393 ----------LSQVESIHRAVARCAGITRRLLGFARPGEI 422

CP001940_1358: domain 1 of 1, from 581 to 654: score 38.2, E = 1.1e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + + a+++HE+++P + Irg+ e+++++l ++gd++ +
CP001940_1 581 AIGLLGAGVAHEINNPAAIIRGNMEIIRRRL---AGGDGTGEVAE-- 622

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e++e + il+ +er++r+ + lL ++r e++
CP001940_1 623 --------EVAEEVAEILKNTERISRITRSLLLFAREEEE 654

CP001940_0637: domain 1 of 1, from 446 to 512: score 36.4, E = 3.7e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++ +++H++++ Lt+I+g++e+ + ++++++ +
CP001940_0 446 SVGRLAGGVAHDFNNMLTVIIGNIEMSMR--------YPAMDDAK-- 482

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l+ +l +a+r ++ ++lL +sr +
CP001940_0 483 ----------HVMLHEALTAARRSAEITRQLLAFSRKQMA 512

CP001940_0663: domain 1 of 1, from 478 to 546: score 35.1, E = 8.3e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ ++sH+LR+PL I y+++L ++l + + e ++
CP001940_0 478 ELEQFAYAASHDLRQPLRMINSYIKILIDKL-------GGQLEGET- 516

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+ + + + a r+++++ lL++sr++
CP001940_0 517 ----------REMMHFAADGASRMDKMLIALLEYSRMGRL 546

CP001940_2052: domain 1 of 1, from 249 to 318: score 33.5, E = 2.5e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++a+++HE+++PL+ ++ +elL+ + + + l+e+
CP001940_2 249 AIGRLAAGIAHEINNPLANASLQLELLKQD-----PTVAFLPEKS-- 288

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ i ++++ ++ ++lL l +++
CP001940_2 289 ----------CQRVKNITSSVDKSAKIASELLHLVDQRQE 318

CP001940_2511: domain 1 of 1, from 531 to 601: score 33.4, E = 2.5e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++a+++H++++ Lta++g+++l++ l++ + ++eq+
CP001940_2 531 SVGLLAAGIAHDFNNLLTAVMGNIDLARF-----LLKKEQPDAEQL- 571

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l ++++ r + L ++lL+++r + +
CP001940_2 572 ----------LNLLADSKKAGLRAQGLTQQLLTFARGGDP 601

CP001940_0916: domain 1 of 1, from 280 to 346: score 31.8, E = 7.4e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ ++ +++H++++ LtaI g+++l++ +l +++ e+
CP001940_0 280 SLGVMAGGIAHDFNNALTAIHGNVSLARLQL--------PANGET-- 316

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l++++ ++ + + L ++lL++++ + +
CP001940_0 317 ----------AGLLQSAEVAIMQASGLARQLLTFAKGGKP 346

CP001940_0734: domain 1 of 1, from 335 to 401: score 30.2, E = 2.1e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++ +++H++++ L +++g+++++ + + ++++ +
CP001940_0 335 SVGRLAGGVAHDFNNMLQGVIGFCDIMAA---------EMAPDDPQ- 371

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e l+ i++++ r +L ++lL ++ +
CP001940_0 372 ----------LENLRAIRQAGLRSAALTRQLLAFASRQPA 401

CP001940_0718: domain 2 of 2, from 69 to 109: score 28.4, E = 6.6e-08
*->lanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrlpeLRl
+a+++H+LR+PL+ I+gy+e+Lle d+e ++e
CP001940_0 69 VATARHDLRNPLNNILGYTEMLLE--------DHEENPEV------- 100

edpeyreyletilr<-*
+++ +++
CP001940_0 101 -----PDFTGQLQE 109

CP001940_1596: domain 1 of 1, from 182 to 284: score 27.6, E = 1.1e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldk.........v.lag
a ++++a+++HE+++P+ + ++ +L ++l k++ +++++ l +
CP001940_1 182 AIGQLAAGVAHEINNPVGFVTSNLGTLAKYLGKtkaffeqqqQlLDR 228

dtelseeqrlpeLR.l....ed.peyreyletilreaerllrLindlLdl
+ ++e +++ eLR+ + +++ +++l+ l+ +er ++++l +
CP001940_1 229 VAGAPERDQAAELRqQyqidFVlSDAHDLLRECLEGVERVKLIVQNLKNF 278

srieag<-*
sr ++
CP001940_1 279 SRVDQA 284


Histogram of all scores:
score obs exp (one = represents 8 sequences)
----- --- ---
-14 10 0|==
-13 26 1|*===
-12 81 59|=======*===
-11 182 310|======================= *
-10 371 576|=============================================== *
-9 441 594|======================================================== *
-8 446 445|=======================================================*
-7 371 280|==================================*============
-6 260 161|====================*============
-5 149 88|==========*========
-4 97 47|=====*=======
-3 36 25|===*=
-2 38 13|=*===
-1 22 6|*==
0 11 3|*=
1 6 1|*
2 10 0|==
3 2 0|=
4 0 0|
> 5 61 -|========


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 440.5689
P(chi-square) = 0

Total sequences searched: 2620

Whole sequence top hits:
tophits_s report:
Total hits: 51
Satisfying E cutoff: 51
Total memory: 22K

Domain top hits:
tophits_s report:
Total hits: 51
Satisfying E cutoff: 51
Total memory: 41K


Acknowledgements:

This research is funded by:

Developed by: