Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
35 projects found  

1 accessions found for Desulfurivibrio alkaliphilus AHT2  

Data for CP001940  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP001940.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001940_1024 CDS_1241522-1242871 31.7 3e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001940_1024 1/1 250 301 .. 8 63 .. 31.7 3e-09

Alignments of top-scoring domains:
CP001940_1024: domain 1 of 1, from 250 to 301: score 31.7, E = 3e-09
*->ELHDsvgQsLsaiklqlelarrlldsdkdpeearealdeirelarea
+LHD+ g ++ i+l++ +a++ ++ +++ r+ l++i+el+re+
CP001940_1 250 DLHDGAGGLMTNINLMAAAALQ----KELDPATRKLLTTIEELSREG 292

laevRrllg<-*
+e+Rr ++
CP001940_1 293 VTEIRRFIS 301


Histogram of all scores:
score obs exp (one = represents 8 sequences)
----- --- ---
-14 7 0|=
-13 43 0|======
-12 48 29|===*==
-11 90 240|============ *
-10 284 557|==================================== *
-9 421 632|===================================================== *
-8 372 487|=============================================== *
-7 349 306|======================================*=====
-6 304 173|=====================*================
-5 272 93|===========*======================
-4 171 48|=====*================
-3 100 24|==*==========
-2 63 12|=*======
-1 41 6|*=====
0 23 3|*==
1 13 1|*=
2 6 0|=
3 4 0|=
4 4 0|=
5 2 0|=
6 1 0|=
> 7 2 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 1700.6169
P(chi-square) = 0

Total sequences searched: 2620

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: