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1 accessions found for Aciduliprofundum boonei T469  

Data for CP001941  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001941.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001941_0496 CDS_485766-482221 49.4 4.4e-14 1
CP001941_0120 CDS_112401-117107 45.5 5.6e-13 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001941_0496 1/1 977 1038 .. 1 87 [] 49.4 4.4e-14
CP001941_0120 1/1 1362 1423 .. 1 87 [] 45.5 5.6e-13

Alignments of top-scoring domains:
CP001941_0496: domain 1 of 1, from 977 to 1038: score 49.4, E = 4.4e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +l +sH+L++PL+++ gy+el+ e e
CP001941_0 977 LQELMLHIVSHDLKNPLAVLHGYLELMNE-------------EGP-- 1008

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
ey+ t++++++ +++i+ + +sr+++
CP001941_0 1009 ----------NEYIPTMIKAVQEAEDIIEKARLFSRLGNK 1038

CP001941_0120: domain 1 of 1, from 1362 to 1423: score 45.5, E = 5.6e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +l +sH+L++PL++I gy++l++e++d
CP001941_0 1362 LQELMLHIVSHDLKNPLAVIEGYIDLMKEGFD--------------- 1393

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yl+ ++ ++e +++i+ + +s+++ag
CP001941_0 1394 ----------PSYLDAMQMAVEEASSIIEKARLFSKLGAG 1423


Histogram of all scores:
score obs exp (one = represents 6 sequences)
----- --- ---
-14 10 0|==
-13 23 1|*===
-12 100 35|=====*===========
-11 202 183|==============================*===
-10 310 339|==================================================== *
-9 262 350|============================================ *
-8 226 262|====================================== *
-7 156 165|========================== *
-6 93 95|===============*
-5 70 52|========*===
-4 41 27|====*==
-3 19 14|==*=
-2 13 7|=*=
-1 5 4|*
0 6 2|*
1 0 1|*
2 2 0|=
3 2 0|=
4 0 0|
> 5 4 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 168.1821
P(chi-square) = 6.598e-31

Total sequences searched: 1544

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: