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5 accessions found for Haloferax volcanii DS2  

Data for CP001953  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001953.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001953_0155 CDS_175343-179248 67.9 6.3e-20 1
CP001953_0143 CDS_160798-159005 63.4 1.1e-18 1
CP001953_0269 CDS_325629-327335 27.4 1.9e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001953_0155 1/1 1100 1161 .. 1 87 [] 67.9 6.3e-20
CP001953_0143 1/1 393 454 .. 1 87 [] 63.4 1.1e-18
CP001953_0269 1/1 354 413 .. 1 81 [. 27.4 1.9e-08

Alignments of top-scoring domains:
CP001953_0155: domain 1 of 1, from 1100 to 1161: score 67.9, E = 6.3e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f++ ++H+LR+PL++ +g++e+++e + ++e+
CP001953_0 1100 RLDQFASVVAHDLRNPLSVAMGFLEIAEE----------TGNAEH-- 1134

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+++++ +r++rLi+dlL+l+r e+
CP001953_0 1135 -------------FEKVESAHDRIERLIEDLLTLARGETK 1161

CP001953_0143: domain 1 of 1, from 393 to 454: score 63.4, E = 1.1e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++sef++ +sH+LR+PL++ g++el++e + ++q
CP001953_0 393 RLSEFASVVSHDLRNPLNVAAGNVELARE----------DHESDQ-- 427

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l t+ r++ r+++Li+dlL+l+r + +
CP001953_0 428 -------------LATAARALARIDDLIDDLLTLARKGDN 454

CP001953_0269: domain 1 of 1, from 354 to 413: score 27.4, E = 1.9e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + ++H++R+ +++I+g+a+l +e ++e +
CP001953_0 354 KLTLLNQIVRHDIRNDMAVILGNAQLVEE----------SVDDEAL- 389

peLRledpeyreyletilreaerllrLindlLdl<-*
re l+ti+r +e+ +L +++ l
CP001953_0 390 ----------RERLDTIIRNGEHATELTVNVRNL 413


Histogram of all scores:
score obs exp (one = represents 2 sequences)
----- --- ---
-13 7 0|====
-12 15 8|===*====
-11 39 44|==================== *
-10 73 82|===================================== *
-9 81 85|========================================= *
-8 48 64|======================== *
-7 46 40|===================*===
-6 28 23|===========*==
-5 14 12|=====*=
-4 9 6|==*==
-3 8 3|=*==
> -2 9 -|=====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 13.4915
P(chi-square) = 0.09602

Total sequences searched: 377

Whole sequence top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 22K


Acknowledgements:

This research is funded by:

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