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5 accessions found for Haloferax volcanii DS2  

Data for CP001955  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001955.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001955_0156 CDS_163458-161332 60.1 1.6e-17 1
CP001955_0529 CDS_553675-551018 60.0 1.7e-17 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001955_0156 1/1 462 525 .. 1 87 [] 60.1 1.6e-17
CP001955_0529 1/1 655 716 .. 1 87 [] 60.0 1.7e-17

Alignments of top-scoring domains:
CP001955_0156: domain 1 of 1, from 462 to 525: score 60.1, E = 1.6e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+ +sH+LR+PL++ gy+el +e ++++++++
CP001955_0 462 QLETFANIVSHDLRNPLNVAEGYLELVKE---------ADRPDPDH- 498

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+i+ + er+ ++i d+L l+r ++
CP001955_0 499 -------------VERIEAAHERMGEIIADVLALARGGTV 525

CP001955_0529: domain 1 of 1, from 655 to 716: score 60.0, E = 1.7e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f++ ++H+LR+PL++ gy +l e + +
CP001955_0 655 RLDDFVSIVAHDLRNPLAVATGYFDLGME-------------SGE-- 686

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r le++ ++++r+++L++++Ldl+r +++
CP001955_0 687 ----------RAHLERAANAVDRMSELVEEVLDLARQRTP 716


Histogram of all scores:
score obs exp (one = represents 2 sequences)
----- --- ---
-14 6 0|===
-13 16 0|========
-12 29 14|======*========
-11 58 72|============================= *
-10 105 134|===================================================== *
-9 107 139|====================================================== *
-8 96 104|================================================ *
-7 83 65|================================*=========
-6 55 37|==================*=========
-5 25 20|=========*===
-4 10 11|=====*
-3 5 5|==*
-2 9 3|=*===
-1 3 1|*=
0 1 0|=
1 1 0|=
> 2 4 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 47.1853
P(chi-square) = 3.625e-07

Total sequences searched: 613

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: