Crenarchaeota Euryarchaeota Nanoarchaeota
Other Archaea
Classification of phyla is from NCBI page
Search:
54 projects found  

5 accessions found for Haloferax volcanii DS2  

Data for CP001956  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001956.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001956_2289 CDS_2205525-2203705 73.7 1.1e-20 1
CP001956_1682 CDS_1584591-1582513 66.6 1.1e-18 1
CP001956_0206 CDS_184703-182364 62.4 1.8e-17 1
CP001956_1773 CDS_1673282-1675861 60.8 4.9e-17 1
CP001956_1979 CDS_1872530-1874488 57.5 4.2e-16 1
CP001956_1372 CDS_1269301-1270497 56.6 7.8e-16 1
CP001956_1430 CDS_1329172-1327610 56.2 1e-15 1
CP001956_0110 CDS_107327-108373 53.1 7.6e-15 1
CP001956_2145 CDS_2063627-2065360 49.3 8.9e-14 1
CP001956_0303 CDS_268220-270109 44.1 2.7e-12 1
CP001956_2771 CDS_2671351-2672361 34.5 1.4e-09 1
CP001956_1177 CDS_1092259-1094385 31.8 8.4e-09 1
CP001956_2600 CDS_2507506-2509395 28.2 8.7e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001956_2289 1/1 362 423 .. 1 87 [] 73.7 1.1e-20
CP001956_1682 1/1 446 507 .. 1 87 [] 66.6 1.1e-18
CP001956_0206 1/1 553 614 .. 1 87 [] 62.4 1.8e-17
CP001956_1773 1/1 655 716 .. 1 87 [] 60.8 4.9e-17
CP001956_1979 1/1 434 495 .. 1 87 [] 57.5 4.2e-16
CP001956_1372 1/1 142 203 .. 1 87 [] 56.6 7.8e-16
CP001956_1430 1/1 294 355 .. 1 87 [] 56.2 1e-15
CP001956_0110 1/1 140 202 .. 1 87 [] 53.1 7.6e-15
CP001956_2145 1/1 468 529 .. 1 87 [] 49.3 8.9e-14
CP001956_0303 1/1 406 467 .. 1 87 [] 44.1 2.7e-12
CP001956_2771 1/1 115 176 .. 1 87 [] 34.5 1.4e-09
CP001956_1177 1/1 474 526 .. 1 74 [. 31.8 8.4e-09
CP001956_2600 1/1 398 463 .. 1 87 [] 28.2 8.7e-08

Alignments of top-scoring domains:
CP001956_2289: domain 1 of 1, from 362 to 423: score 73.7, E = 1.1e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ef++ +sH+LR+PLt+ rgy+el+ e +
CP001956_2 362 RLDEFASVVSHDLRNPLTVARGYLELAAE-------------TGD-- 393

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ey+e+i+++ +r++ +i+dlL+l+r ++
CP001956_2 394 ----------AEYFERIENAHDRMETIIEDLLTLAREGET 423

CP001956_1682: domain 1 of 1, from 446 to 507: score 66.6, E = 1.1e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ef++ +sH+LR+PL++ +g++el++e e++
CP001956_1 446 RLEEFASVVSHDLRNPLNVAKGFVELARE-------------EDD-- 477

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yl+++l+ + r++ ++nd+L+l+r +
CP001956_1 478 ----------VTYLDRALDGVTRMDTILNDVLTLARQGRK 507

CP001956_0206: domain 1 of 1, from 553 to 614: score 62.4, E = 1.8e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ef+ +sH+LR+PL++ rg++el++e + +e
CP001956_0 553 RLEEFANIVSHDLRNPLSVARGNLELARE----------TGDEVR-- 587

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++t++r++e++++Li+dlL l+r ++
CP001956_0 588 -------------FDTAERALEQMEELIDDLLSLARRGQL 614

CP001956_1773: domain 1 of 1, from 655 to 716: score 60.8, E = 4.9e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f++ +sH+L++PL+a +gy++l++e++d
CP001956_1 655 QLESFASVVSHDLKNPLNAAMGYLDLAREQYD--------------- 686

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+++ ++ er+ +++d+L l+r ++
CP001956_1 687 ----------GDELDRVADAHERMAGIVEDMLALARNGQT 716

CP001956_1979: domain 1 of 1, from 434 to 495: score 57.5, E = 4.2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f++ +sH+LR+PL + +g +elL + ++++++
CP001956_1 434 RLDRFASVVSHDLRNPLQVAMGRLELLAD----------DCDSDH-- 468

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ i r+++r+++Li+dlL l+ ++
CP001956_1 469 -------------IDDISRALDRMDDLISDLLVLAHDGND 495

CP001956_1372: domain 1 of 1, from 142 to 203: score 56.6, E = 7.8e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f++ + H+LR+PL++ ++ +el++e
CP001956_1 142 RLDQFASVVTHDLRNPLNVAQMRLELARE-------------GHG-- 173

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e l+t+ ++ +r+++Li+d+L+l+r +++
CP001956_1 174 ----------TEHLSTVADAHDRMEALIQDVLQLARVGEE 203

CP001956_1430: domain 1 of 1, from 294 to 355: score 56.2, E = 1e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ef++ lsH+LR+PL++ +g+++l +e + ++e+
CP001956_1 294 RLGEFARVLSHDLRNPLSVAIGFLDLERE----------TNDSEH-- 328

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le++ ++ r+++++nd+L+ +r ++
CP001956_1 329 -------------LERVATSLTRISDIVNDVLTAARRGTA 355

CP001956_0110: domain 1 of 1, from 140 to 202: score 53.1, E = 7.6e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ ++++lsH+LR+PL++ gy+e Ll+ +++ ++
CP001956_0 140 RLRNLARMLSHDLRNPLSVAVGYVESLLD---------ETAASDR-- 175

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le++ +++r++++i d L l+r ++
CP001956_0 176 -------------LERVAGALDRMDDIITDALVLARHDTV 202

CP001956_2145: domain 1 of 1, from 468 to 529: score 49.3, E = 8.9e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ef++ +sH+LR+PL++ g+++l++e e + ++
CP001956_2 468 RLDEFTSVVSHDLRNPLSVATGHLDLARE----------EIDNDH-- 502

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l + r+ +r+ +L ++lL l+r ++
CP001956_2 503 -------------LAAVARAHDRMTALTEELLVLARQGTD 529

CP001956_0303: domain 1 of 1, from 406 to 467: score 44.1, E = 2.7e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f++ lsH++R PL++ +g +el++e l+++ +
CP001956_0 406 RLDAFARVLSHDIRGPLAVAQGRLELARE-----------LDDDSH- 440

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+ ++r+ +r+ + ++d+L l+r e
CP001956_0 441 -------------LDHVERAHRRITDVVEDVLSLARDERS 467

CP001956_2771: domain 1 of 1, from 115 to 176: score 34.5, E = 1.4e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + + +sH+LR+PL + ++++ +++e + + e+
CP001956_2 115 AVEPVSSVISHDLRNPLDVAKAHLRAARE----------TGDTEH-- 149

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e + ++ er++r+i+d+L++sr ++
CP001956_2 150 -------------FEAVADAHERMERIIRDVLTISRDRTV 176

CP001956_1177: domain 1 of 1, from 474 to 526: score 31.8, E = 8.4e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ + + l+H+LR+ +++I+g+a+lLl+ + ++e
CP001956_1 474 RLRVLNRVLRHDLRNDMNVILGHADLLLD---------ERIPAES-- 509

peLRledpeyreyletilreaerllrL<-*
++ +ti+r a +l +L
CP001956_1 510 ----------KDHARTIKRKASSLVEL 526

CP001956_2600: domain 1 of 1, from 398 to 463: score 28.2, E = 8.7e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ + ++H+ R+ L + +yaelL e++d + ++
CP001956_2 398 ELGVLNQVVRHDVRNDLQLVTAYAELLAEYVD----------DGDA- 433

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
rey+e+++r a++ +L +d++ + +
CP001956_2 434 ----------REYVEIVRRRANHAVELTKTARDMAEMMST 463


Histogram of all scores:
score obs exp (one = represents 9 sequences)
----- --- ---
-14 19 0|===
-13 62 2|*======
-12 176 67|=======*============
-11 333 349|===================================== *
-10 520 647|==========================================================*
-9 508 668|========================================================= *
-8 478 500|====================================================== *
-7 338 315|==================================*===
-6 204 181|====================*==
-5 124 99|==========*===
-4 74 53|=====*===
-3 35 28|===*
-2 20 14|=*=
-1 18 7|*=
0 9 4|*
1 3 2|*
2 4 1|*
> 3 20 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 276.6098
P(chi-square) = 0

Total sequences searched: 2945

Whole sequence top hits:
tophits_s report:
Total hits: 13
Satisfying E cutoff: 13
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 13
Satisfying E cutoff: 13
Total memory: 26K


Acknowledgements:

This research is funded by:

Developed by: