Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
106 projects found  

1 accessions found for Segniliparus rotundus DSM 44985  

Data for CP001958  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001958.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001958_1634 CDS_1656793-1655273 81.8 5.6e-23 1
CP001958_0854 CDS_858075-860645 70.9 7e-20 1
CP001958_0097 CDS_77155-75446 70.4 9.9e-20 1
CP001958_1601 CDS_1622672-1623913 64.4 5e-18 1
CP001958_2170 CDS_2244835-2243168 62.8 1.4e-17 1
CP001958_1240 CDS_1232487-1233833 51.3 2.5e-14 1
CP001958_2995 CDS_3148297-3149832 31.1 1.3e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001958_1634 1/1 277 344 .. 1 87 [] 81.8 5.6e-23
CP001958_0854 1/1 618 686 .. 1 87 [] 70.9 7e-20
CP001958_0097 1/1 334 398 .. 1 87 [] 70.4 9.9e-20
CP001958_1601 1/1 161 227 .. 1 87 [] 64.4 5e-18
CP001958_2170 1/1 290 357 .. 1 87 [] 62.8 1.4e-17
CP001958_1240 1/1 211 283 .. 1 87 [] 51.3 2.5e-14
CP001958_2995 1/1 277 343 .. 1 87 [] 31.1 1.3e-08

Alignments of top-scoring domains:
CP001958_1634: domain 1 of 1, from 277 to 344: score 81.8, E = 5.6e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+a++sHELRTPL++Irgy+el++++l +e ++e
CP001958_1 277 RVRQFVADASHELRTPLAVIRGYTELAQRDL-------AEVPAEV-- 314

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + ++ ea r+ L++dlL l+r+++g
CP001958_1 315 ----------AHAMGRVGAEAVRMTGLVEDLLLLARLDSG 344

CP001958_0854: domain 1 of 1, from 618 to 686: score 70.9, E = 7e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +l+++sH+LRTPL+a++++++ L+ d e s+e++
CP001958_0 618 LRRALLSAVSHDLRTPLAAVKAAVSSLRS-------DDVEFSPEDV- 656

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+l ti+++a++l +L+ +lLd sr+ ag
CP001958_0 657 ----------GELLATIEESADQLTALVGNLLDSSRLAAG 686

CP001958_0097: domain 1 of 1, from 334 to 398: score 70.4, E = 9.9e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a++sHELRTPLta+rg+ael ++ ++ +
CP001958_0 334 RMRQFVADASHELRTPLTAMRGFAELHRT----------GAGVST-- 368

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++i++ea r+ +L++dlL l+r +++
CP001958_0 369 ----------TIAMSRIESEAIRMGKLVEDLLVLARTDEE 398

CP001958_1601: domain 1 of 1, from 161 to 227: score 64.4, E = 5e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+an+sHEL+TP+ +++++ae+Lle + ++e +
CP001958_1 161 ARRDFVANVSHELKTPVGGLSLLAEALLE---------SLDDAEAV- 197

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + e+++ ea+r+ ++ +l lsr++
CP001958_1 198 ----------RHFGERMHAEANRMAMMVTELIALSRLQGA 227

CP001958_2170: domain 1 of 1, from 290 to 357: score 62.8, E = 1.4e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f++++sHELRTPLt++r++a+l+ +++els+e
CP001958_2 290 LQRQFTSDVSHELRTPLTTVRLAADLIHG-------SRDELSPEL-- 327

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ e ++ e++r ++L+ lL++sr +ag
CP001958_2 328 ----------ARSSELLEAELDRFESLLTSLLEISRHDAG 357

CP001958_1240: domain 1 of 1, from 211 to 283: score 51.3, E = 2.5e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkv.lagdtelseeqr
++ +++ ++ HELRTPLt++r+++elL + ++ g ++++e+++
CP001958_1 211 RQKRLVEDAGHELRTPLTSLRTNLELLIA----AsQEGAAHMPEKDM 253

lpeLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +l ++e + L+ dl dl+r +a+
CP001958_1 254 -----------ADLRADVLAQIEEFSTLVTDLVDLAREDAP 283

CP001958_2995: domain 1 of 1, from 277 to 343: score 31.1, E = 1.3e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++f+ +HELRTPLta+r+++e+L ++l+ ++r
CP001958_2 277 TARDFALLSAHELRTPLTAMRTNLEVLNI---------HNLPQDDR- 313

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e++ +lr +r ++ ++ l l+ e +
CP001958_2 314 ----------QEIVGDVLRTQRRVEETLSALEHLAAHELN 343


Histogram of all scores:
score obs exp (one = represents 11 sequences)
----- --- ---
-15 1 0|=
-14 7 0|=
-13 35 2|*===
-12 138 68|======*======
-11 294 356|=========================== *
-10 476 661|============================================ *
-9 615 682|======================================================== *
-8 515 511|==============================================*
-7 388 322|=============================*======
-6 234 185|================*=====
-5 132 101|=========*==
-4 84 54|====*===
-3 40 28|==*=
-2 13 15|=*
-1 11 7|*
0 3 4|*
1 4 2|*
2 3 1|*
3 3 0|=
> 4 10 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 196.5935
P(chi-square) = 3.784e-36

Total sequences searched: 3006

Whole sequence top hits:
tophits_s report:
Total hits: 7
Satisfying E cutoff: 7
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 7
Satisfying E cutoff: 7
Total memory: 23K


Acknowledgements:

This research is funded by:

Developed by: