Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
106 projects found  

1 accessions found for Segniliparus rotundus DSM 44985  

Data for CP001958  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP001958.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001958_2155 CDS_2226767-2225229 108.7 7e-31 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001958_2155 1/1 308 390 .. 1 94 [] 108.7 7e-31

Alignments of top-scoring domains:
CP001958_2155: domain 1 of 1, from 308 to 390: score 108.7, E = 7e-31
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
EIHHRVKNNLQ +S+LLr+Qar++++ e+ + aL++s++R+ S
CP001958_2 308 EIHHRVKNNLQSVSALLRMQARRTENLEA-----RQALEDSVRRIGS 349

mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
+Al+H+ L+ s + + v +++ ++kL+ L ++ + g + + +
CP001958_2 350 IALVHDALSISSN-EHVSVDDIVDKLIVMLSDLSAPGTSVV-----V 390


Histogram of all scores:
score obs exp (one = represents 15 sequences)
----- --- ---
-15 9 0|=
-14 21 0|==
-13 73 18|=*===
-12 241 197|=============*===
-11 880 549|====================================*======================
-10 671 711|============================================= *
-9 457 600|=============================== *
-8 289 403|==================== *
-7 135 239|========= *
-6 122 133|========*
-5 48 71|====*
-4 20 38|==*
-3 18 19|=*
-2 10 10|*
-1 3 5|*
0 5 2|*
1 2 1|*
> 2 2 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 496.1760
P(chi-square) = 0

Total sequences searched: 3006

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: