Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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106 projects found  

1 accessions found for Segniliparus rotundus DSM 44985  

Data for CP001958  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP001958.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001958_2324 CDS_2400246-2401931 53.1 1.7e-15 1
CP001958_1680 CDS_1714696-1713092 52.4 2.7e-15 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001958_2324 1/1 370 436 .. 1 70 [] 53.1 1.7e-15
CP001958_1680 1/1 343 408 .. 1 70 [] 52.4 2.7e-15

Alignments of top-scoring domains:
CP001958_2324: domain 1 of 1, from 370 to 436: score 53.1, E = 1.7e-15
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
R RIAR+LHD v Q+L++i l+++ +r++ +k p +++e+l+e
CP001958_2 370 DRDRIARDLHDHVIQRLFVIGLGMQSTHRRA--AKTP-AVAERLTEH 413

relarealaevRrllgdLRpaal<-*
+ ++e ++e+R ++ dL++a++
CP001958_2 414 IDRIHEVIEEIRTAIFDLHTAGD 436

CP001958_1680: domain 1 of 1, from 343 to 408: score 52.4, E = 2.7e-15
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
R+RIAR+LHD v Q+L+ai l++++ rr++ + e+ ++ld
CP001958_1 343 DRERIARDLHDHVIQRLFAIGLGMQGTRRMA--LQP--ELPARLDDH 385

relarealaevRrllgdLRpaal<-*
+ ++e ++++R+++ +L+p++
CP001958_1 386 IDRLHEVIQDIRATIFELQPDGS 408


Histogram of all scores:
score obs exp (one = represents 9 sequences)
----- --- ---
-14 5 0|=
-13 34 0|====
-12 61 33|===*===
-11 97 275|=========== *
-10 327 639|===================================== *
-9 485 725|====================================================== *
-8 413 559|============================================== *
-7 407 351|======================================*=======
-6 359 199|======================*=================
-5 331 106|===========*=========================
-4 178 55|======*=============
-3 138 28|===*============
-2 64 14|=*======
-1 36 7|*===
0 28 3|*===
1 11 1|*=
2 13 0|==
3 6 0|=
4 2 0|=
5 3 0|=
6 3 0|=
7 0 0|
> 8 5 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 1977.6332
P(chi-square) = 0

Total sequences searched: 3006

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: