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Classification of phyla is from NCBI page
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106 projects found  

1 accessions found for Cellulomonas flavigena DSM 20109  

Data for CP001964  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001964.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001964_1254 CDS_1420270-1422039 87.6 1.5e-24 1
CP001964_3300 CDS_3718476-3719573 84.4 1.3e-23 1
CP001964_0708 CDS_774945-773398 81.3 9.5e-23 1
CP001964_1202 CDS_1369403-1368300 74.0 1.1e-20 1
CP001964_2301 CDS_2606594-2604825 63.0 1.5e-17 1
CP001964_3488 CDS_3928073-3926961 59.4 1.6e-16 1
CP001964_2109 CDS_2382048-2383340 58.7 2.4e-16 1
CP001964_0648 CDS_711635-712906 58.2 3.4e-16 1
CP001964_2358 CDS_2675925-2674588 56.6 9.7e-16 1
CP001964_2650 CDS_2988108-2989649 53.5 7.4e-15 1
CP001964_3504 CDS_3943141-3941933 51.5 2.7e-14 1
CP001964_0350 CDS_384089-383091 49.3 1.1e-13 1
CP001964_1275 CDS_1447280-1448677 47.9 2.9e-13 1
CP001964_1555 CDS_1753701-1755299 44.8 2.1e-12 1
CP001964_0852 CDS_939027-940100 41.9 1.4e-11 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001964_1254 1/1 363 430 .. 1 87 [] 87.6 1.5e-24
CP001964_3300 1/1 146 213 .. 1 87 [] 84.4 1.3e-23
CP001964_0708 1/1 262 329 .. 1 87 [] 81.3 9.5e-23
CP001964_1202 1/1 134 198 .. 1 87 [] 74.0 1.1e-20
CP001964_2301 1/1 289 356 .. 1 87 [] 63.0 1.5e-17
CP001964_3488 1/1 148 212 .. 1 87 [] 59.4 1.6e-16
CP001964_2109 1/1 180 248 .. 1 87 [] 58.7 2.4e-16
CP001964_0648 1/1 155 221 .. 1 87 [] 58.2 3.4e-16
CP001964_2358 1/1 212 277 .. 1 87 [] 56.6 9.7e-16
CP001964_2650 1/1 279 343 .. 1 87 [] 53.5 7.4e-15
CP001964_3504 1/1 173 241 .. 1 87 [] 51.5 2.7e-14
CP001964_0350 1/1 108 172 .. 1 87 [] 49.3 1.1e-13
CP001964_1275 1/1 247 312 .. 1 87 [] 47.9 2.9e-13
CP001964_1555 1/1 299 367 .. 1 87 [] 44.8 2.1e-12
CP001964_0852 1/1 139 205 .. 1 87 [] 41.9 1.4e-11

Alignments of top-scoring domains:
CP001964_1254: domain 1 of 1, from 363 to 430: score 87.6, E = 1.5e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f+ +sHELRTPLt+++gy+elLl+ g +el++eq
CP001964_1 363 LKDQFVGLVSHELRTPLTSVLGYVELLLD-------GTEELTDEQ-- 400

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
reyl +i+r a+r lrL++dlL ++ +ag
CP001964_1 401 ----------REYLGIIDRNARRQLRLVSDLLLSAQVDAG 430

CP001964_3300: domain 1 of 1, from 146 to 213: score 84.4, E = 1.3e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+a+++HELRTP+t+Irgyael + ++++++q
CP001964_3 146 RLRTFVADAAHELRTPVTTIRGYAELFDR---------GARDDPQ-- 181

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e + l++i++eaer+ +L++dl l+r++a+
CP001964_3 182 --------ELPKVLSRIRSEAERMGDLVDDLVLLARLDAE 213

CP001964_0708: domain 1 of 1, from 262 to 329: score 81.3, E = 9.5e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a++sHELRTPL+++rgyael ++++ + ++eq+
CP001964_0 262 RMRRFVADASHELRTPLATLRGYAELYRMGA--------TTTPEQV- 299

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +i+ +a r+ +L++dlL l+r+++g
CP001964_0 300 ----------ADTMARIEGSATRMGSLVEDLLALARLDEG 329

CP001964_1202: domain 1 of 1, from 134 to 198: score 74.0, E = 1.1e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++an+sHELRTP+ta+++ +e + +++ +e ++ +
CP001964_1 134 FRRELVANVSHELRTPVTALQAQLENMVDGV-------SEPDPAT-- 171

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l ++l ++erl+rL++ lLdlsr eag
CP001964_1 172 -------------LAVALAQTERLSRLVSSLLDLSRVEAG 198

CP001964_2301: domain 1 of 1, from 289 to 356: score 63.0, E = 1.5e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f++++sHELRTPLt+Ir++ e++ +++ +
CP001964_2 289 LQRRFVSDVSHELRTPLTTIRMAGEVIHG-------ARDDFEPAV-- 326

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ e + +++r ++L+ dlL++sr +ag
CP001964_2 327 ----------KRSAELLATQLDRFEDLLADLLEISRFDAG 356

CP001964_3488: domain 1 of 1, from 148 to 212: score 59.4, E = 1.6e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++la+++HE+RTP++++ +y+e++++++ ++l++e+
CP001964_3 148 LRGRLLADVAHEIRTPVATLTAYLEAIEDGV-------QDLGAET-- 185

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++++a rl rL +dl +r+e+g
CP001964_3 186 -------------VALLRDQASRLTRLSDDLTAVTRAESG 212

CP001964_2109: domain 1 of 1, from 180 to 248: score 58.7, E = 2.4e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a++sHELRTP++ + + a+lL++++ +++ + q
CP001964_2 180 RQRRFVADASHELRTPIAQVHARAQLLRRRA------RGTEDHAQ-- 218

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l+++ + ++rl +++++lL +r+ a
CP001964_2 219 ----------ARDLDRLVETTRRLGEIVDELLLSARMAAA 248

CP001964_0648: domain 1 of 1, from 155 to 221: score 58.2, E = 3.4e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+ n+sHEL+TP+ a++++ae+ ++ ++ ++e +
CP001964_0 155 IRRDFVVNVSHELKTPVGALSLLAETVQD---------AADDPEAV- 191

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ +++ ea rl++L+ ++ +lsr++
CP001964_0 192 ----------RRFSGRMRAEASRLSALVHEIIELSRLQVA 221

CP001964_2358: domain 1 of 1, from 212 to 277: score 56.6, E = 9.7e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++f++++sH+LRTPLta+++ +e + ++se+++
CP001964_2 212 AERQFASDASHQLRTPLTALSMRLEEIML----------AASEPEV- 247

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re ++ l+++erl r ++dlL+ sr +g
CP001964_2 248 ----------REEARISLEQVERLVRVVDDLLTSSRRAQG 277

CP001964_2650: domain 1 of 1, from 279 to 343: score 53.5, E = 7.4e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e+l ++ HELRTPLt +rg++elL + ++
CP001964_2 279 SQRELLDDVGHELRTPLTIVRGHLELLDP----------ADASDV-- 313

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + +l+e++r++rL++dl +l+ ++ +
CP001964_2 314 ----------RATQSLALDELDRMQRLVDDLVTLATADRP 343

CP001964_3504: domain 1 of 1, from 173 to 241: score 51.5, E = 2.7e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+ + a++ H+LRTPL++ +++++ L+ +d +++e+ r
CP001964_3 173 ARAALRASVGHDLRTPLASTKAAVSSLRQ-------SDVAWPEPVR- 211

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l ti+++++rl r + +lLd++r+++
CP001964_3 212 ----------AQLLATIEDSTDRLTRVVANLLDMTRLRSD 241

CP001964_0350: domain 1 of 1, from 108 to 172: score 49.3, E = 1.1e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++la+++HE RTP+++I gy+e+ +++l ++++e+++
CP001964_0 108 LRARLLADVAHEVRTPVATIAGYLEAVEDGL-------QPMDEPTM- 146

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++++ rl rL +dl +r+eag
CP001964_0 147 --------------AVLRDQSARLTRLARDLAAVTRAEAG 172

CP001964_1275: domain 1 of 1, from 247 to 312: score 47.9, E = 2.9e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+a+++HELR P++a r+++e++ + ++ +
CP001964_1 247 RQRAFVADAAHELRSPVAAARAAVEVAAA---------HPDAYPV-- 282

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ + ++ r+++L++dlL l+r ++
CP001964_1 283 ----------DDLVADLAPQVARMQALVDDLLVLARVGSA 312

CP001964_1555: domain 1 of 1, from 299 to 367: score 44.8, E = 2.1e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+ +sH+L PL + +++lL++++ ++ l+e
CP001964_1 299 DLEQFAYVASHDLQEPLRKVASFTQLLQKRY------SGQLDERA-- 337

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y++ + + a+r++rLi+dlL +sr +
CP001964_1 338 ----------DQYIDFAVDGAKRMQRLIQDLLGFSRVGRV 367

CP001964_0852: domain 1 of 1, from 139 to 205: score 41.9, E = 1.4e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+a++sHELRTPL+a r+++e+ l+ + +++
CP001964_0 139 DRERFVADASHELRTPLAATRAALEAPLA--------QGRFPDDV-- 175

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++l + r +L+ lL+l+r e
CP001964_0 176 ----------VPDVRRALAANARSAALVAALLQLARGEVD 205


Histogram of all scores:
score obs exp (one = represents 13 sequences)
----- --- ---
-15 1 0|=
-14 10 0|=
-13 33 2|*==
-12 162 84|======*======
-11 343 435|=========================== *
-10 583 808|============================================= *
-9 750 835|==========================================================*
-8 657 625|================================================*==
-7 463 394|==============================*=====
-6 256 226|=================*==
-5 179 124|=========*====
-4 117 66|=====*===
-3 51 35|==*=
-2 34 18|=*=
-1 7 9|*
0 6 5|*
1 6 2|*
2 2 1|*
3 1 0|=
4 1 0|=
> 5 16 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 264.4718
P(chi-square) = 0

Total sequences searched: 3678

Whole sequence top hits:
tophits_s report:
Total hits: 15
Satisfying E cutoff: 15
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 15
Satisfying E cutoff: 15
Total memory: 26K


Acknowledgements:

This research is funded by:

Developed by: