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Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
106 projects found  

1 accessions found for Cellulomonas flavigena DSM 20109  

Data for CP001964  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP001964.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001964_2367 CDS_2689330-2687849 111.0 2e-31 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001964_2367 1/1 293 354 .. 1 68 [. 111.0 2e-31

Alignments of top-scoring domains:
CP001964_2367: domain 1 of 1, from 293 to 354: score 111.0, E = 2e-31
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
EIHHRVKNNLQ++++LLrLQ+r+ ++e+ ++aL E+ +RV++
CP001964_2 293 EIHHRVKNNLQTVAALLRLQSRRMASPEA-----RDALAEAMRRVAT 334

mAliHEeLYksedldtvdfse<-*
+Al+HE L+++ d ++v f++
CP001964_2 335 IALVHETLSQTLD-ESVPFDD 354


Histogram of all scores:
score obs exp (one = represents 20 sequences)
----- --- ---
-15 4 0|=
-14 29 0|==
-13 71 23|=*==
-12 261 241|============*=
-11 1148 672|=================================*========================
-10 832 870|========================================== *
-9 527 735|=========================== *
-8 409 493|===================== *
-7 162 292|========= *
-6 127 163|======= *
-5 43 87|=== *
-4 29 46|==*
-3 18 24|=*
-2 6 12|*
-1 7 6|*
0 1 3|*
1 1 1|*
2 1 0|=
3 0 0|
4 0 0|
> 5 2 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 613.7890
P(chi-square) = 0

Total sequences searched: 3678

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: