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Classification of phyla is from NCBI page
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264 projects found  

1 accessions found for Sideroxydans lithotrophicus ES-1  

Data for CP001965  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001965.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001965_1156 CDS_1140754-1138028 96.6 3.5e-27 1
CP001965_1284 CDS_1278789-1276276 92.1 6.9e-26 1
CP001965_0583 CDS_598111-595934 81.6 6.3e-23 1
CP001965_0331 CDS_336564-337886 81.5 6.8e-23 1
CP001965_2476 CDS_2521874-2523268 70.6 8.7e-20 1
CP001965_2565 CDS_2625929-2624109 69.5 1.7e-19 1
CP001965_1322 CDS_1319133-1322420 68.5 3.4e-19 1
CP001965_2372 CDS_2413311-2414822 67.8 5.1e-19 1
CP001965_2617 CDS_2679711-2678086 67.7 5.7e-19 1
CP001965_0262 CDS_262200-263450 62.5 1.7e-17 1
CP001965_1008 CDS_990415-989072 60.5 6.3e-17 1
CP001965_2908 CDS_2939275-2940336 58.9 1.7e-16 1
CP001965_1750 CDS_1773978-1772215 56.6 7.6e-16 1
CP001965_1323 CDS_1322505-1324163 52.0 1.5e-14 1
CP001965_2811 CDS_2846367-2845015 40.7 2.5e-11 1
CP001965_0012 CDS_14340-16478 39.0 7.8e-11 1
CP001965_0727 CDS_733272-731965 36.4 4.1e-10 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001965_1156 1/1 254 319 .. 1 87 [] 96.6 3.5e-27
CP001965_1284 1/1 188 253 .. 1 87 [] 92.1 6.9e-26
CP001965_0583 1/1 204 269 .. 1 87 [] 81.6 6.3e-23
CP001965_0331 1/1 205 272 .. 1 87 [] 81.5 6.8e-23
CP001965_2476 1/1 237 302 .. 1 87 [] 70.6 8.7e-20
CP001965_2565 1/1 233 298 .. 1 87 [] 69.5 1.7e-19
CP001965_1322 1/1 870 938 .. 1 87 [] 68.5 3.4e-19
CP001965_2372 1/1 275 340 .. 1 87 [] 67.8 5.1e-19
CP001965_2617 1/1 325 390 .. 1 87 [] 67.7 5.7e-19
CP001965_0262 1/1 207 273 .. 1 87 [] 62.5 1.7e-17
CP001965_1008 1/1 229 294 .. 1 87 [] 60.5 6.3e-17
CP001965_2908 1/1 129 194 .. 1 87 [] 58.9 1.7e-16
CP001965_1750 1/1 216 282 .. 1 87 [] 56.6 7.6e-16
CP001965_1323 1/1 327 395 .. 1 87 [] 52.0 1.5e-14
CP001965_2811 1/1 221 289 .. 1 87 [] 40.7 2.5e-11
CP001965_0012 1/1 487 559 .. 1 87 [] 39.0 7.8e-11
CP001965_0727 1/1 225 290 .. 1 87 [] 36.4 4.1e-10

Alignments of top-scoring domains:
CP001965_1156: domain 1 of 1, from 254 to 319: score 96.6, E = 3.5e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+eflan+sHELRTP++a++g+++l+l tels++q
CP001965_1 254 IKDEFLANMSHELRTPMNAVIGLSHLCLQ---------TELSDKQ-- 289

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl++i+++a++ll ++nd+Ld s+ieag
CP001965_1 290 ----------QDYLQKIHSSAKSLLGILNDILDVSKIEAG 319

CP001965_1284: domain 1 of 1, from 188 to 253: score 92.1, E = 6.9e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fl+n+sHE+RTPL++++g+ +lLl t l++eq
CP001965_1 188 AKSDFLSNMSHEMRTPLNGVIGAGDLLLG---------TRLDDEQ-- 223

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ t++++a+ ll+Li+++Ldls+ie+g
CP001965_1 224 ----------KDLVATLKKSAHLLLKLIDNILDLSKIESG 253

CP001965_0583: domain 1 of 1, from 204 to 269: score 81.6, E = 6.3e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ fla++sHE+RTPLt+++g++elL + t l+ eq
CP001965_0 204 AKDSFLATMSHEIRTPLTGMLGMLELLSM---------TQLDMEQ-- 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l+t+ ++++ llr+++d+Ld s+ie+g
CP001965_0 240 ----------RMTLDTAWDSGRGLLRIVSDILDWSKIEEG 269

CP001965_0331: domain 1 of 1, from 205 to 272: score 81.5, E = 6.8e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+an+sHELRTPLt++ g++e++++ + e +++
CP001965_0 205 MRRDFVANVSHELRTPLTVVNGFVETMQD---------MPNLENDMA 242

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++l+ + +++ r+ +L++dlL+lsr+e++
CP001965_0 243 ----------RRALQLMGNQTSRMKSLVDDLLTLSRLENE 272

CP001965_2476: domain 1 of 1, from 237 to 302: score 70.6, E = 8.7e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+a+++H+LRTP +++++ +el+l+ t+++e +
CP001965_2 237 AQQRFVADAAHQLRTPFAGLKTQSELALR---------TDAPERK-- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +le i+ ++++ rL+n+lL l+r e g
CP001965_2 273 ----------QHALEHIHTSTQHGIRLVNQLLALARNEPG 302

CP001965_2565: domain 1 of 1, from 233 to 298: score 69.5, E = 1.7e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sH+LR+PL a+r+++++L++ t++ e+
CP001965_2 233 AKSRFLATASHDLRQPLQALRLFSDALQD---------TAREKET-- 268

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ i ++++ l ++ +dlLd sr++ag
CP001965_2 269 ----------VRLAGQIGKSVNALVDMFDDLLDVSRLDAG 298

CP001965_1322: domain 1 of 1, from 870 to 938: score 68.5, E = 3.4e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f ++sH+LRTPL aI g++++L+e++ ++l++e
CP001965_1 870 ELEAFSYSVSHDLRTPLRAIDGFSHILQEDYA------GKLDDEG-- 908

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+++++ a+r+ Li+d+L +sr++
CP001965_1 909 ----------KRLLKVVRDNANRMGLLIDDILKFSRAGRI 938

CP001965_2372: domain 1 of 1, from 275 to 340: score 67.8, E = 5.1e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s l++lsH++RTPLt++ g+a++L ++l++
CP001965_2 275 LRSSILSALSHDIRTPLTVLYGMADTLAQ---------SALPDAL-- 310

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+ + +++++ rl++++++lLd+++++ag
CP001965_2 311 ----------HEMADAMRQQTLRLNSMVSNLLDMAKLRAG 340

CP001965_2617: domain 1 of 1, from 325 to 390: score 67.7, E = 5.7e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++an++HE R+PL++I+ ++elL+e + ++ q
CP001965_2 325 ALGRLTANIAHEVRNPLSSISYATELLKE---------QRHDPAQ-- 360

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++++il+ + rl+r+++d++ r +
CP001965_2 361 ----------ARLFQIILDNTSRLNRIVQDVMLVNRRDRV 390

CP001965_0262: domain 1 of 1, from 207 to 273: score 62.5, E = 1.7e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f+a++sHELRTPL+ ++g++e+L+ d++l+++q
CP001965_0 207 RENFFTADVSHELRTPLAIMLGTVEVLEQ--------DGTLTAKQ-- 243

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e + +i+r+a+ + +L + lL ++r +
CP001965_0 244 ----------AERVARIRRAAQDMIELTSALLLMAREHRN 273

CP001965_1008: domain 1 of 1, from 229 to 294: score 60.5, E = 6.3e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++f+a+++HELRTP++aI++ a+++++ + + e
CP001965_1 229 KERRFTADAAHELRTPVAAIKAQAQVART---------ASAETER-- 264

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l+ ++ +r +Li++lL+l+ri++
CP001965_1 265 ----------AHALDNAILGCDRAAHLIEQLLTLARIDTL 294

CP001965_2908: domain 1 of 1, from 129 to 194: score 58.9, E = 1.7e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + +l+nl+HE+++PL +Irg+a+lL+ el + +
CP001965_2 129 ANRLLLRNLAHEIKNPLGGIRGAAQLLEQ----------ELEKPAL- 164

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
rey++++++ea+rl++L + lL+ +
CP001965_2 165 ----------REYTQVVIQEADRLRSLMEKLLTPQHVPHF 194

CP001965_1750: domain 1 of 1, from 216 to 282: score 56.6, E = 7.6e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+fla++sH+LR+PL+a+++++e L+ ++ ls++
CP001965_1 216 SKSRFLAAASHDLRQPLAALILFLEQLEL--------EQQLSPKG-- 252

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l +l ++ +l++L++ lLd+sr++
CP001965_1 253 ----------RGVLAHALLSTSSLSSLLDGLLDISRLDGH 282

CP001965_1323: domain 1 of 1, from 327 to 395: score 52.0, E = 1.5e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f+ ++sH+LR PL aI g++ +L++e+ +++l+ e
CP001965_1 327 DLENFTYSASHDLRIPLRAIDGFSRILQDEY------SQKLDGEG-- 365

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+++++ a+ + + i+d+L +sr+++
CP001965_1 366 ----------MRQLNVVRDNARKMAQYIDDMLAFSRAGHM 395

CP001965_2811: domain 1 of 1, from 221 to 289: score 40.7, E = 2.5e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+ +sH+L+ PL +I+ +a+ L +++ ++ +e+
CP001965_2 221 ELNNFAYVVSHDLKAPLRGISSLADWLSTDYA------DKFDEDG-- 259

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e + +++ ++r++ Li+ +L +sr +
CP001965_2 260 ----------KEQMRLLINRVHRMDGLIDGILLYSRVGRV 289

CP001965_0012: domain 1 of 1, from 487 to 559: score 39.0, E = 7.8e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e ++ l+HE+++PLt I++ ae L+ +l l++ +e +++ +
CP001965_0 487 AWGEVARRLAHEIKNPLTPIQLSAERLQHKL---LGKLDEHDSQLL- 529

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++ti +++ + +++ ++ ++r+ a
CP001965_0 530 ----------QRATQTIVSQVAAMKNMVTEFANYARAPAA 559

CP001965_0727: domain 1 of 1, from 225 to 290: score 36.4, E = 4.1e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ +a+++HEL TPL++++ + +++ + s+eq
CP001965_0 225 ALGTQAAGAAHELGTPLSTMSVVIGEMRN---------ECTSPEQ-- 260

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l +++++++ + r+++ lL +r +
CP001965_0 261 ----------QDNLIILDEQVRNCKRILDTLLSHARETSS 290


Histogram of all scores:
score obs exp (one = represents 10 sequences)
----- --- ---
-15 1 0|=
-14 13 0|==
-13 56 2|*=====
-12 138 68|======*=======
-11 324 353|================================= *
-10 472 655|================================================ *
-9 576 676|==========================================================*
-8 499 506|==================================================*
-7 363 319|===============================*=====
-6 220 183|==================*===
-5 127 100|=========*===
-4 68 53|=====*=
-3 41 28|==*==
-2 24 14|=*=
-1 18 7|*=
0 9 4|*
1 5 2|*
2 2 1|*
3 0 0|
4 1 0|=
> 5 23 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 188.3499
P(chi-square) = 1.929e-34

Total sequences searched: 2980

Whole sequence top hits:
tophits_s report:
Total hits: 17
Satisfying E cutoff: 17
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 17
Satisfying E cutoff: 17
Total memory: 27K


Acknowledgements:

This research is funded by:

Developed by: