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Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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106 projects found  

2 accessions found for Tsukamurella paurometabola DSM 20162  

Data for CP001966  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP001966.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001966_1087 CDS_1135900-1137405 115.4 1.2e-32 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001966_1087 1/1 302 369 .. 1 74 [. 115.4 1.2e-32

Alignments of top-scoring domains:
CP001966_1087: domain 1 of 1, from 302 to 369: score 115.4, E = 1.2e-32
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
EIHHRVKNNLQ +S+LLrLQar++++ e+ + aL+Es++RV+S
CP001966_1 302 EIHHRVKNNLQSVSALLRLQARRTRNDEA-----KRALHESVRRVAS 343

mAliHEeLYksedldtvdfseYlekLt<-*
+Al+HE L++s d ++v++++++++L+
CP001966_1 344 IALVHETLSMSVD-EQVNIDDVIDRLI 369


Histogram of all scores:
score obs exp (one = represents 22 sequences)
----- --- ---
-15 10 0|=
-14 24 0|==
-13 81 26|=*==
-12 255 273|============*
-11 1266 760|==================================*=======================
-10 934 983|=========================================== *
-9 619 830|============================= *
-8 498 557|======================= *
-7 199 331|========== *
-6 150 184|======= *
-5 52 99|=== *
-4 31 52|==*
-3 18 27|=*
-2 8 14|*
-1 7 7|*
0 3 3|*
1 0 2|*
> 2 2 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 613.4153
P(chi-square) = 0

Total sequences searched: 4157

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: