Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
25 projects found  

1 accessions found for Denitrovibrio acetiphilus DSM 12809  

Data for CP001968  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP001968.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001968_1545 CDS_1650246-1651694 48.8 3.2e-14 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001968_1545 1/1 286 352 .. 1 70 [] 48.8 3.2e-14

Alignments of top-scoring domains:
CP001968_1545: domain 1 of 1, from 286 to 352: score 48.8, E = 3.2e-14
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+ I +LHD++gQ+L++i+ ++ +++r l + +e +++i
CP001968_1 286 ERKKIGNDLHDGLGQMLTGISYMSNALQRNL---SGNENTLPIAENI 329

relarealaevRrllgdLRpaal<-*
++ +++al+ +R++l +L p a+
CP001968_1 330 EAYSKRALQMMRDILNGLCPVAE 352


Histogram of all scores:
score obs exp (one = represents 12 sequences)
----- --- ---
-14 32 0|===
-13 93 0|========
-12 150 33|==*==========
-11 248 271|===================== *
-10 613 630|====================================================*
-9 653 715|======================================================= *
-8 406 551|================================== *
-7 276 346|======================= *
-6 182 196|================*
-5 143 105|========*===
-4 70 54|====*=
-3 42 28|==*=
-2 26 14|=*=
-1 16 7|*=
0 4 3|*
1 5 1|*
2 2 0|=
3 0 0|
4 1 0|=
5 0 0|
6 0 0|
> 7 2 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 518.4321
P(chi-square) = 0

Total sequences searched: 2964

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: