hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HWE_HK.hmm [HWE_HK]
Sequence database: CP001969.Gprot.fsa
per-sequence score cutoff: >= 60.0 [TC1]
per-domain score cutoff: >= 60.0 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HWE_HK
Accession: PF07536.4
Description: HWE histidine kinase
[HMM has been calibrated; E-values are empirical estimates]
Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
[no hits above thresholds]
Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
[no hits above thresholds]
Alignments of top-scoring domains:
[no hits above thresholds]
Histogram of all scores:
score obs exp (one = represents 15 sequences)
----- --- ---
-17 1 0|=
-16 7 0|=
-15 2 0|=
-14 42 0|===
-13 131 0|=========
-12 518 0|===================================
-11 562 38|==*===================================
-10 870 491|================================*=========================
-9 805 1217|====================================================== *
-8 822 1264|======================================================= *
-7 441 849|============================== *
-6 211 463|=============== *
-5 156 229|=========== *
-4 100 108|=======*
-3 45 50|===*
-2 22 23|=*
-1 11 10|*
0 5 4|*
1 2 2|*
> 2 4 -|=
% Statistical details of theoretical EVD fit:
mu = -7.9989
lambda = 0.7843
chi-sq statistic = 7983.0010
P(chi-square) = 0
Total sequences searched: 4757
Whole sequence top hits:
tophits_s report:
Total hits: 0
Satisfying E cutoff: 0
Total memory: 20K
Domain top hits:
tophits_s report:
Total hits: 0
Satisfying E cutoff: 0
Total memory: 20K
