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Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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106 projects found  

1 accessions found for Propionibacterium acnes SK137  

Data for CP001977  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001977.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001977_1341 CDS_1437550-1436072 76.0 2e-21 1
CP001977_0393 CDS_431340-430168 66.5 9.7e-19 1
CP001977_2098 CDS_2222041-2223471 64.5 3.6e-18 1
CP001977_0121 CDS_141906-144398 60.3 5.5e-17 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001977_1341 1/1 246 311 .. 1 87 [] 76.0 2e-21
CP001977_0393 1/1 151 217 .. 1 87 [] 66.5 9.7e-19
CP001977_2098 1/1 250 320 .. 1 87 [] 64.5 3.6e-18
CP001977_0121 1/1 603 671 .. 1 87 [] 60.3 5.5e-17

Alignments of top-scoring domains:
CP001977_1341: domain 1 of 1, from 246 to 311: score 76.0, E = 2e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f++++sHELRTP+t++r+++e+ ++ + ++ q
CP001977_1 246 LQQQFVSDVSHELRTPMTTMRMASEMVEA---------NPDDPVQ-- 281

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +e ++ + erl+ L+ dlL++sr +ag
CP001977_1 282 ----------VRSVELMRAQMERLELLLADLLEISRFDAG 311

CP001977_0393: domain 1 of 1, from 151 to 217: score 66.5, E = 9.7e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHEL+TP+ a++ +ae+++ ++ ++e +
CP001977_0 151 TRRDFVANVSHELKTPIGAVSILAEAIEG---------AADDPEAV- 187

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + +++ e+ rl++L+ ++ dlsr++a
CP001977_0 188 ----------RHFSQRLTAESSRLSALVTQIIDLSRLQAD 217

CP001977_2098: domain 1 of 1, from 250 to 320: score 64.5, E = 3.6e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +++a++sHELRTPLt++r+++elL +++ +++ l+ee r
CP001977_2 250 RQKQLIADASHELRTPLTSMRTNVELLMADQ-----KSHMLPEEAR- 290

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+l+ + ++ ++Li dl +lsr +a+
CP001977_2 291 ----------GEILDDVAAQLGEFSSLIGDLVQLSREDAP 320

CP001977_0121: domain 1 of 1, from 603 to 671: score 60.3, E = 5.5e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +l+++ H+LR PL+a ++++ L+ ++++ls+++r
CP001977_0 603 VRTALLSAVGHDLRRPLAAATAAVSGLRS-------EWSKLSDQDR- 641

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++let+++++ +l +L+ dlLd sr+++g
CP001977_0 642 ----------ADLLETADEALSQLANLVTDLLDVSRLQSG 671


Histogram of all scores:
score obs exp (one = represents 9 sequences)
----- --- ---
-16 1 0|=
-15 4 0|=
-14 28 0|====
-13 63 1|*======
-12 158 53|=====*============
-11 230 278|========================== *
-10 400 517|============================================= *
-9 478 534|====================================================== *
-8 383 399|=========================================== *
-7 254 252|===========================*=
-6 161 145|================*=
-5 84 79|========*=
-4 41 42|====*
-3 35 22|==*=
-2 11 11|=*
-1 9 6|*
0 3 3|*
1 2 1|*
2 1 0|=
3 0 0|
> 4 6 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 254.2563
P(chi-square) = 0

Total sequences searched: 2352

Whole sequence top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: