Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
106 projects found  

1 accessions found for Propionibacterium acnes SK137  

Data for CP001977  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP001977.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001977_1295 CDS_1374793-1373318 95.8 2.6e-27 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001977_1295 1/1 296 376 .. 1 94 [] 95.8 2.6e-27

Alignments of top-scoring domains:
CP001977_1295: domain 1 of 1, from 296 to 376: score 95.8, E = 2.6e-27
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
EIHHRVKNNLQ++++LLrLQ+r+ ++ ++ ++aL+ + +RV +
CP001977_1 296 EIHHRVKNNLQTVAALLRLQSRRMSNSDA-----KDALKQAMGRVSA 337

mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
+A +HE L+++ + ++v f+e+ +++++ + ++ +++ +
CP001977_1 338 IAVVHEILSQNFE-EQVAFDEVADRILHMVGDVAASSGS-------V 376


Histogram of all scores:
score obs exp (one = represents 11 sequences)
----- --- ---
-15 8 0|=
-14 17 0|==
-13 71 14|=*=====
-12 174 154|=============*==
-11 623 430|=======================================*=================
-10 521 556|================================================ *
-9 349 470|================================ *
-8 275 315|========================= *
-7 112 187|=========== *
-6 112 104|=========*=
-5 42 56|==== *
-4 25 29|==*
-3 10 15|=*
-2 4 8|*
-1 4 4|*
> 0 5 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 379.8874
P(chi-square) = 0

Total sequences searched: 2352

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: