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Thermotogae
Classification of phyla is from NCBI page
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106 projects found  

1 accessions found for Mobiluncus curtisii ATCC 43063  

Data for CP001992  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001992.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001992_1369 CDS_1562128-1560575 80.8 6.9e-23 1
CP001992_0512 CDS_596031-597953 70.6 5.6e-20 1
CP001992_0444 CDS_506481-507884 61.2 2.6e-17 1
CP001992_0409 CDS_466575-464971 53.7 3.3e-15 1
CP001992_1030 CDS_1203057-1201738 45.7 6.2e-13 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001992_1369 1/1 295 361 .. 1 87 [] 80.8 6.9e-23
CP001992_0512 1/1 279 345 .. 1 87 [] 70.6 5.6e-20
CP001992_0444 1/1 240 306 .. 1 87 [] 61.2 2.6e-17
CP001992_0409 1/1 259 326 .. 1 87 [] 53.7 3.3e-15
CP001992_1030 1/1 205 266 .. 1 87 [] 45.7 6.2e-13

Alignments of top-scoring domains:
CP001992_1369: domain 1 of 1, from 295 to 361: score 80.8, E = 6.9e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ef an+sHEL+TPLt+I+gyae+++++l ++e+
CP001992_1 295 SRREFSANVSHELKTPLTSISGYAEIIRNGL--------VRDEDI-- 331

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e+i++e+ rll+Li d+++lsr+++g
CP001992_1 332 ----------PGFAERIHQESSRLLDLIGDIMELSRLDEG 361

CP001992_0512: domain 1 of 1, from 279 to 345: score 70.6, E = 5.6e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f++++sHELRTP +aIrgyael ++ + ++e +
CP001992_0 279 KMRRFVSDASHELRTPTAAIRGYAELSRM---------GGVGPERQ- 315

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e +i++ea r+ ++++dlL+l+r+++
CP001992_0 316 ----------AEVMARIESEATRMGNMVQDLLTLARLDEH 345

CP001992_0444: domain 1 of 1, from 240 to 306: score 61.2, E = 2.6e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+ ++a++sH++RTPL+ ++g+a L++ ++ ls ++
CP001992_0 240 ARANWIAGVSHDIRTPLSMVMGFAGQLEN--------SPQLSVPD-- 276

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ + i++++er+ +Li+dl s+++ +
CP001992_0 277 ----------RKKVTMIIKQSERMKNLIRDLNLASKLDYN 306

CP001992_0409: domain 1 of 1, from 259 to 326: score 53.7, E = 3.3e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f++++sHELRTPLt++r + +++ + ++el++
CP001992_0 259 LQQRFVSDVSHELRTPLTTMRIADDVIYD-------AREELDPAA-- 296

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e +++++er ++++ dlL++sri++g
CP001992_0 297 ----------LRSAELLHDQIERFDAMLADLLEISRIDSG 326

CP001992_1030: domain 1 of 1, from 205 to 266: score 45.7, E = 6.2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++f++++sH+LRTPLta+++ +e +++ se+++
CP001992_1 205 AERQFASDVSHQLRTPLTALSMRLEEIQM----------ISSEPEV- 240

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ e l+++erl i+dl + ++
CP001992_1 241 ----------QQEAEQCLDQLERLTGVIEDL----KRNSQ 266


Histogram of all scores:
score obs exp (one = represents 6 sequences)
----- --- ---
-15 1 0|=
-14 11 0|==
-13 43 1|*=======
-12 87 43|=======*=======
-11 186 226|=============================== *
-10 339 419|========================================================= *
-9 335 433|======================================================== *
-8 329 324|=====================================================*=
-7 238 204|=================================*======
-6 141 117|===================*====
-5 86 64|==========*====
-4 49 34|=====*===
-3 27 18|==*==
-2 8 9|=*
-1 7 5|*=
0 9 2|*=
1 2 1|*
2 2 0|=
3 1 0|=
4 0 0|
5 1 0|=
> 6 7 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 116.7306
P(chi-square) = 8.228e-20

Total sequences searched: 1909

Whole sequence top hits:
tophits_s report:
Total hits: 5
Satisfying E cutoff: 5
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 5
Satisfying E cutoff: 5
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: