Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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25 projects found  

1 accessions found for Aminobacterium colombiense DSM 12261  

Data for CP001997  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001997.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001997_1651 CDS_1726013-1727776 71.1 3.9e-20 1
CP001997_0684 CDS_714930-713827 55.3 1.1e-15 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001997_1651 1/1 352 418 .. 1 87 [] 71.1 3.9e-20
CP001997_0684 1/1 135 201 .. 1 87 [] 55.3 1.1e-15

Alignments of top-scoring domains:
CP001997_1651: domain 1 of 1, from 352 to 418: score 71.1, E = 3.9e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+a++ HE+ TPLt+Ir++ae L++el +e+
CP001997_1 352 ARRDFIADAGHEFQTPLTTIRLTAEYLQDEL--------RGNEDV-- 388

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l++i+++ er+ +L++dlL lsr+e++
CP001997_1 389 ----------AGHLQSIIQQQERMTQLVDDLLLLSRLESQ 418

CP001997_0684: domain 1 of 1, from 135 to 201: score 55.3, E = 1.1e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++ a+ sHELRTP+++I+g +e++l+ +++ +
CP001997_0 135 QLKQLSADTSHELRTPIAVIKGKIEIMLM---------STREPSY-- 170

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y e l+ i ++e ++++++ +L+lsr
CP001997_0 171 ---------YVERLQQIMVQIENMQQIVESILELSRFSKF 201


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-15 2 0|=
-14 8 0|==
-13 20 1|*==
-12 86 42|=====*=======
-11 201 222|============================= *
-10 368 412|===================================================== *
-9 356 426|=================================================== *
-8 319 318|=============================================*
-7 226 201|============================*====
-6 129 115|================*==
-5 70 63|========*=
-4 45 33|====*==
-3 16 17|==*
-2 14 9|=*
-1 6 4|*
0 3 2|*
1 2 1|*
2 2 0|=
> 3 3 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 73.0860
P(chi-square) = 1.12e-11

Total sequences searched: 1876

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: