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Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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1 accessions found for Aminobacterium colombiense DSM 12261  

Data for CP001997  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP001997.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001997_1835 CDS_1929764-1927779 64.6 4.5e-19 1
CP001997_0402 CDS_437698-439110 43.7 6.2e-13 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001997_1835 1/1 442 507 .. 1 70 [] 64.6 4.5e-19
CP001997_0402 1/1 252 318 .. 1 70 [] 43.7 6.2e-13

Alignments of top-scoring domains:
CP001997_1835: domain 1 of 1, from 442 to 507: score 64.6, E = 4.5e-19
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+RI+ +LHDsvgQ+L++ +++le++++++ + + a+d +
CP001997_1 442 ERRRISTDLHDSVGQNLALSRIKLEMLKKRT--KGR--DHQGAIDDV 484

relarealaevRrllgdLRpaal<-*
l++++++e+R l+ +L p+ l
CP001997_1 485 LSLINRSIQEMRTLIFELSPPML 507

CP001997_0402: domain 1 of 1, from 252 to 318: score 43.7, E = 6.2e-13
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
E +RIAR++HD+ Q ++a++ q+ l + + +p e r +l+ +
CP001997_0 252 EKKRIARDIHDGPLQDITAMIQQMRLFNMNH--HCPPKESR-HLKLA 295

relarealaevRrllgdLRpaal<-*
+e+a+ a +++R+l +L p+ l
CP001997_0 296 EEAAQIAVRDLRELCDELSPPWL 318


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-15 1 0|=
-14 11 0|==
-13 33 0|=====
-12 51 20|==*=====
-11 108 171|================ *
-10 330 398|================================================ *
-9 392 453|======================================================== *
-8 299 349|=========================================== *
-7 196 219|============================ *
-6 177 124|=================*========
-5 121 66|=========*========
-4 67 34|====*=====
-3 38 17|==*===
-2 22 9|=*==
-1 11 4|*=
0 8 2|*=
1 5 1|*
2 1 0|=
3 0 0|
4 0 0|
> 5 5 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 234.0266
P(chi-square) = 2.387e-314

Total sequences searched: 1876

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: