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Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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25 projects found  

1 accessions found for Coraliomargarita akajimensis DSM 45221  

Data for CP001998  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001998.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001998_1888 CDS_2298462-2295805 103.3 4.6e-29 1
CP001998_0877 CDS_1123029-1120687 99.4 6e-28 1
CP001998_1407 CDS_1771861-1769945 94.9 1.2e-26 1
CP001998_1127 CDS_1430233-1427204 94.4 1.6e-26 1
CP001998_2332 CDS_2868606-2870366 93.5 2.9e-26 1
CP001998_0644 CDS_837363-833788 90.2 2.4e-25 1
CP001998_2091 CDS_2593818-2595134 88.4 7.9e-25 1
CP001998_1156 CDS_1466503-1464722 85.3 5.9e-24 1
CP001998_1020 CDS_1308550-1311765 85.3 6.1e-24 1
CP001998_1147 CDS_1453272-1456487 79.8 2.2e-22 1
CP001998_1388 CDS_1745699-1744350 69.5 1.8e-19 1
CP001998_2003 CDS_2436772-2438304 69.0 2.5e-19 1
CP001998_1592 CDS_1981679-1980531 68.9 2.6e-19 1
CP001998_2392 CDS_2936467-2937615 67.1 8.5e-19 1
CP001998_1301 CDS_1652017-1655874 64.8 3.9e-18 1
CP001998_2467 CDS_3017714-3019057 51.4 2.4e-14 1
CP001998_2158 CDS_2670640-2668949 44.4 2.4e-12 1
CP001998_1421 CDS_1787876-1789369 42.6 7.5e-12 1
CP001998_0645 CDS_838508-837366 41.7 1.4e-11 1
CP001998_1911 CDS_2331204-2329696 41.3 1.8e-11 1
CP001998_2390 CDS_2932902-2935031 38.6 1e-10 1
CP001998_1352 CDS_1714323-1716224 36.3 4.8e-10 1
CP001998_2352 CDS_2894743-2893574 35.6 7.2e-10 1
CP001998_2457 CDS_3009585-3008467 30.2 2.4e-08 1
CP001998_1920 CDS_2342247-2339965 28.5 7.3e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001998_1888 1/1 238 303 .. 1 87 [] 103.3 4.6e-29
CP001998_0877 1/1 401 466 .. 1 87 [] 99.4 6e-28
CP001998_1407 1/1 233 298 .. 1 87 [] 94.9 1.2e-26
CP001998_1127 1/1 623 688 .. 1 87 [] 94.4 1.6e-26
CP001998_2332 1/1 183 248 .. 1 87 [] 93.5 2.9e-26
CP001998_0644 1/1 833 898 .. 1 87 [] 90.2 2.4e-25
CP001998_2091 1/1 193 261 .. 1 87 [] 88.4 7.9e-25
CP001998_1156 1/1 354 419 .. 1 87 [] 85.3 5.9e-24
CP001998_1020 1/1 834 900 .. 1 87 [] 85.3 6.1e-24
CP001998_1147 1/1 697 762 .. 1 87 [] 79.8 2.2e-22
CP001998_1388 1/1 195 260 .. 1 87 [] 69.5 1.8e-19
CP001998_2003 1/1 290 356 .. 1 87 [] 69.0 2.5e-19
CP001998_1592 1/1 151 217 .. 1 87 [] 68.9 2.6e-19
CP001998_2392 1/1 151 216 .. 1 87 [] 67.1 8.5e-19
CP001998_1301 1/1 809 875 .. 1 87 [] 64.8 3.9e-18
CP001998_2467 1/1 54 115 .. 1 87 [] 51.4 2.4e-14
CP001998_2158 1/1 350 416 .. 1 87 [] 44.4 2.4e-12
CP001998_1421 1/1 247 319 .. 1 87 [] 42.6 7.5e-12
CP001998_0645 1/1 148 219 .. 1 87 [] 41.7 1.4e-11
CP001998_1911 1/1 133 198 .. 1 87 [] 41.3 1.8e-11
CP001998_2390 1/1 476 542 .. 1 87 [] 38.6 1e-10
CP001998_1352 1/1 392 458 .. 1 87 [] 36.3 4.8e-10
CP001998_2352 1/1 162 234 .. 1 87 [] 35.6 7.2e-10
CP001998_2457 1/1 147 214 .. 1 87 [] 30.2 2.4e-08
CP001998_1920 1/1 386 452 .. 1 87 [] 28.5 7.3e-08

Alignments of top-scoring domains:
CP001998_1888: domain 1 of 1, from 238 to 303: score 103.3, E = 4.6e-29
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+efla++sHE+RTP+++++g++el++e tel++eq
CP001998_1 238 AKGEFLAAMSHEIRTPINGVIGASELCQE---------TELDAEQ-- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r yl+t++++++ ll+L+nd+Ld+s+ieag
CP001998_1 274 ----------RAYLDTVIQCGNTLLSLVNDVLDFSKIEAG 303

CP001998_0877: domain 1 of 1, from 401 to 466: score 99.4, E = 6e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTPL++I+g++++L+e tel++eq
CP001998_0 401 AKSAFLATMSHEIRTPLNSIIGFSDMLQE---------TELDDEQ-- 436

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le i++++ ll+Lind+Ldls+ieag
CP001998_0 437 ----------CSDLEAIRSSGALLLELINDILDLSKIEAG 466

CP001998_1407: domain 1 of 1, from 233 to 298: score 94.9, E = 1.2e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTPL++++g++++L tel++eq
CP001998_1 233 AKSSFLATMSHEIRTPLNGVIGFIDMLSQ---------TELNAEQ-- 268

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ey+++++ ++e l +Lind+Ld+s+ie+g
CP001998_1 269 ----------QEYIQSLQMSSETLMALINDILDFSKIESG 298

CP001998_1127: domain 1 of 1, from 623 to 688: score 94.4, E = 1.6e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+efla++sHE+RTP++aI+gy++lL+ t+l+e q
CP001998_1 623 AKGEFLAMMSHEIRTPMNAIIGYTDLLRQ---------TNLDELQ-- 658

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e ++i+r+++ ll+Lin++Ld+s+ie+
CP001998_1 659 ----------AEQASIIKRSGKALLELINNILDYSKIESR 688

CP001998_2332: domain 1 of 1, from 183 to 248: score 93.5, E = 2.9e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+ flan+sHE+RTP+++++g+++lL + te+++eq
CP001998_2 183 MKDIFLANMSHEIRTPMNGVLGMIDLLYD---------TEMDAEQ-- 218

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ t++++ae l r+ind+Ld+s+ieag
CP001998_2 219 ----------EQLVGTARSSAETLMRIINDILDFSKIEAG 248

CP001998_0644: domain 1 of 1, from 833 to 898: score 90.2, E = 2.4e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ksef+an+sHE+RTP+++I+g+a++L++ ++ ++ +
CP001998_0 833 IKSEFTANISHEIRTPMNSIMGFADILRD---------ETVNPTH-- 868

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ yl+ +l++++ ll++i+dlLd+s++ea
CP001998_0 869 ----------QHYLDAVLKSGDTLLHMIDDLLDMSKLEAD 898

CP001998_2091: domain 1 of 1, from 193 to 261: score 88.4, E = 7.9e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ef+an+sHELRTPLt I+g+ae+L e+ + l+ e r
CP001998_2 193 VRREFVANVSHELRTPLTIIKGFAETLVEDN-------ASLPVEAR- 231

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++le+il+ aerl L++dlL+lsr+e+
CP001998_2 232 ----------ARFLEKILNNAERLHVLVEDLLTLSRLESK 261

CP001998_1156: domain 1 of 1, from 354 to 419: score 85.3, E = 5.9e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+fl n+sHE RTPL++I+gya+lL++ t+l+e q
CP001998_1 354 TKSRFLTNMSHETRTPLHSISGYASLLED---------TDLDEVQ-- 389

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re +e i+++++rl++L++d+ +ls +e
CP001998_1 390 ----------RESVEEIRQSSDRLEQLLSDIIELSSLEKH 419

CP001998_1020: domain 1 of 1, from 834 to 900: score 85.3, E = 6.1e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ fl n+sHE+RTP++aI g++e+L++ ++l+ e++
CP001998_1 834 IKTAFLQNMSHEIRTPMNAIVGFLEMLKA---------DDLTREEH- 870

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++i++ ++ ll Li+d+Ld++r+eag
CP001998_1 871 ----------DDFSNIIRSNSQTLLVLIDDILDMARLEAG 900

CP001998_1147: domain 1 of 1, from 697 to 762: score 79.8, E = 2.2e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+efla +sHE+RTPL+ I+g++ +L+e + +e++
CP001998_1 697 AKDEFLAVMSHEMRTPLNPILGFSAMLRE---------SLPNEPE-- 732

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ yl+ti ++a+r lrLi+d+Ld+ ri +
CP001998_1 733 ----------AGYLDTIVSAANRQLRLIDDILDYMRINNS 762

CP001998_1388: domain 1 of 1, from 195 to 260: score 69.5, E = 1.8e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+efl +sHELR PL+ I+g+++lL+e + ++eq
CP001998_1 195 TKTEFLMLMSHELRSPLNPILGFSSLLEE---------DIEDPEQ-- 230

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl i++++ rll++i+ +L++s + g
CP001998_1 231 ----------KRYLAYIKESSVRLLDMIEAVLEYSCLADG 260

CP001998_2003: domain 1 of 1, from 290 to 356: score 69.0, E = 2.5e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+a++sHELRTP+++I++ ++ +l+ e+ +e+
CP001998_2 290 QQVRFTADASHELRTPISVILAKCQFALM---------REREPEK-- 325

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y +l+t + +a++++ L++ lL+l+ri++g
CP001998_2 326 ---------YVAALKTCEASAQHIRGLVESLLELARIDSG 356

CP001998_1592: domain 1 of 1, from 151 to 217: score 68.9, E = 2.6e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++ + +sH+LR+PL++Irg++e L+ ++l++eq
CP001998_1 151 AKNRIIGVASHDLRNPLSSIRGLSEFLEH--------AGPLNPEQ-- 187

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+ +ti+ +++++l+L+++lLdls ie+g
CP001998_1 188 ----------QEIARTIQMASDSMLHLVDELLDLSVIESG 217

CP001998_2392: domain 1 of 1, from 151 to 216: score 67.1, E = 8.5e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fl +sHEL+TP+++I+g++elL++ t+l+eeq
CP001998_2 151 AKSNFLEIVSHELNTPMNGILGFIELLED---------TALDEEQ-- 186

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y+eti++++++ + ++d+ +++++
CP001998_2 187 ----------RDYVETIRDCSKQYFENVQDIFTYAKLSMS 216

CP001998_1301: domain 1 of 1, from 809 to 875: score 64.8, E = 3.9e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ fla++sHE+R+P+++I+g a l++e d+++++
CP001998_1 809 IKQYFLASMSHEIRNPMNGILGIARLMKE--------DSKKNDAG-- 845

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e ++ ++++a++l +L+ ++Ld+s +eag
CP001998_1 846 ----------TERINHLYSCARHLHQLLGEVLDYSSLEAG 875

CP001998_2467: domain 1 of 1, from 54 to 115: score 51.4, E = 2.4e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++a+lsHELRTPL++++g++++L + e+
CP001998_2 54 TSNALFATLSHELRTPLNGVLGLSQMLND-------------NED-- 85

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re l i+ +a+++l+ + l ls+i+ +
CP001998_2 86 ----------REELVAIEGCARHMLAVLHTLVNLSKIQVE 115

CP001998_2158: domain 1 of 1, from 350 to 416: score 44.4, E = 2.4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++a ++HE+R+PLt+I+++ + L + + r
CP001998_2 350 TLGMLAAEIAHEIRNPLTVIKLLFDSLDL---------QFIEGDAR- 386

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +i + +++l+++++++L + r ++g
CP001998_2 387 ----------QTDVTVIGDKLNHLEEIVERVLSFGRNREG 416

CP001998_1421: domain 1 of 1, from 247 to 319: score 42.6, E = 7.5e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+ +a ++HEL+TP++aI+g+++l+++++ ++e+
CP001998_1 247 AKSDIMALVAHELKTPINAIIGFCQLARDFV------SQECQGRI-K 286

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+eL ++ l++i ++a+ l+ +lL + ++a
CP001998_1 287 KEL-------EDDLDSINEAAQTLEMHTKQLLLSEELDAK 319

CP001998_0645: domain 1 of 1, from 148 to 219: score 41.7, E = 1.4e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e+la+l+H++++P ++I+g a +L+++ ++++ s+e++
CP001998_0 148 RQTELLATLAHDIKNPASGIQGIATMLKDDI----QSSESDSPEEL- 189

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l++++++a +++L+n +L +r ++
CP001998_0 190 ----------CSMLDVLIECAIGMNELVNGILNEERDKHE 219

CP001998_1911: domain 1 of 1, from 133 to 198: score 41.3, E = 1.8e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ s ++++++HEL++ L+ I++ + +L++ +++
CP001998_1 133 STSLLASGVAHELNNALAPIMLSSAMLKR---------KIEDAKS-- 168

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+l i+++a +L++ lL ++r + g
CP001998_1 169 ----------REMLGMIEKCASKGADLVSHLLAYERGRGG 198

CP001998_2390: domain 1 of 1, from 476 to 542: score 38.6, E = 1e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ ++a+lsHELR+PL +Ir++++lL++ + +
CP001998_2 476 SLGTMAAGLSHELRNPLVSIRTLTSLLKK---------NPTQLRLT- 512

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+ t++r+++r+ +++ + +++
CP001998_2 513 ----------EEFSATVQRDVKRIYGIVDGVSAFAQNTKR 542

CP001998_1352: domain 1 of 1, from 392 to 458: score 36.3, E = 4.8e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++a+++HE ++PL +I++ +e L++ + + ++++
CP001998_1 392 TVGRLAAGVAHEVKNPLGVIQLGVEYLQK---------QIQEPPEL- 428

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ e ++ +++ ++ i +lLd+s +
CP001998_1 429 ----------LELMEDMKVATDKANEVIFELLDYSAPHEI 458

CP001998_2352: domain 1 of 1, from 162 to 234: score 35.6, E = 7.2e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +++a+++HEL +PL+++ +++l++++l +l + +
CP001998_2 162 SIVRLAAGVAHELGNPLNSLTIHLQLIERKL-------RKLQLGDDA 201

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ L e l++ + e+ rl+ +i +L+ r + +
CP001998_2 202 NKL-------VESLNVCQGEVTRLDGIITHFLEAVRPQKP 234

CP001998_2457: domain 1 of 1, from 147 to 214: score 30.2, E = 2.4e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++l H++++P + I++ a l ++ +e++++
CP001998_2 147 LVGTMVSSLLHDFKNPFAIISLGATLVSQKY-------GEQDPKV-- 184

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ i+++++r+ ++ nd+ ++r ++
CP001998_2 185 ----------AKICANIESQTRRMVDMANDIAAFARGDEA 214

CP001998_1920: domain 1 of 1, from 386 to 452: score 28.5, E = 7.3e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ s+++ +++H++++ Lta++g++++ ++ + e+
CP001998_1 386 SISQLAGGIAHDFNNMLTAVLGNISVVRM--------SLGSEHEE-- 422

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ le+++++a + + L ++lL +s+ +a+
CP001998_1 423 ----------ANRLESAEKAALQARTLTQQLLSFSKGGAP 452


Histogram of all scores:
score obs exp (one = represents 10 sequences)
----- --- ---
-14 3 0|=
-13 31 2|*===
-12 127 71|=======*=====
-11 280 369|============================ *
-10 532 686|====================================================== *
-9 578 708|==========================================================*
-8 554 530|====================================================*===
-7 397 334|=================================*======
-6 248 192|===================*=====
-5 157 105|==========*=====
-4 84 56|=====*===
-3 50 29|==*==
-2 28 15|=*=
-1 6 8|*
0 11 4|*=
1 3 2|*
2 1 1|*
3 1 0|=
4 0 0|
5 0 0|
6 1 0|=
> 7 28 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 215.2710
P(chi-square) = 9.439e-310

Total sequences searched: 3120

Whole sequence top hits:
tophits_s report:
Total hits: 25
Satisfying E cutoff: 25
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 25
Satisfying E cutoff: 25
Total memory: 31K


Acknowledgements:

This research is funded by:

Developed by: