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Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
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Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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32 projects found  

1 accessions found for Arcobacter nitrofigilis DSM 7299  

Data for CP001999  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001999.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001999_1151 CDS_1128779-1125228 97.3 2.5e-27 1
CP001999_2024 CDS_2026122-2027228 88.0 1e-24 1
CP001999_0355 CDS_335662-339924 87.3 1.6e-24 1
CP001999_1047 CDS_1040152-1042449 86.6 2.5e-24 1
CP001999_3107 CDS_3176573-3177943 67.5 6.5e-19 1
CP001999_0288 CDS_280199-278823 62.0 2.3e-17 1
CP001999_0053 CDS_52960-51929 51.2 2.7e-14 1
CP001999_0603 CDS_595706-594381 44.1 2.8e-12 1
CP001999_2155 CDS_2145172-2144000 40.7 2.7e-11 1
CP001999_1046 CDS_1040076-1039033 36.0 5.6e-10 1
CP001999_1896 CDS_1906110-1904926 34.5 1.5e-09 1
CP001999_2083 CDS_2088495-2089646 34.5 1.5e-09 1
CP001999_2756 CDS_2802918-2804807 33.5 2.9e-09 1
CP001999_1192 CDS_1168760-1171369 33.4 3e-09 1
CP001999_0636 CDS_619431-622343 31.5 1e-08 1
CP001999_2559 CDS_2587414-2588634 31.3 1.2e-08 1
CP001999_1178 CDS_1154066-1155958 31.3 1.2e-08 1
CP001999_0386 CDS_375741-373519 28.4 7.8e-08 1
CP001999_2981 CDS_3029979-3031022 28.3 8.8e-08 1
CP001999_0390 CDS_381101-379002 27.9 1.1e-07 1
CP001999_0157 CDS_151195-152268 27.6 1.4e-07 1
CP001999_0759 CDS_752990-751446 27.2 1.8e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001999_1151 1/1 486 551 .. 1 87 [] 97.3 2.5e-27
CP001999_2024 1/1 146 212 .. 1 87 [] 88.0 1e-24
CP001999_0355 1/1 718 783 .. 1 87 [] 87.3 1.6e-24
CP001999_1047 1/1 319 385 .. 1 87 [] 86.6 2.5e-24
CP001999_3107 1/1 233 299 .. 1 87 [] 67.5 6.5e-19
CP001999_0288 1/1 249 316 .. 1 87 [] 62.0 2.3e-17
CP001999_0053 1/1 119 186 .. 1 87 [] 51.2 2.7e-14
CP001999_0603 1/1 207 273 .. 1 87 [] 44.1 2.8e-12
CP001999_2155 1/1 181 243 .. 1 87 [] 40.7 2.7e-11
CP001999_1046 1/1 137 199 .. 1 87 [] 36.0 5.6e-10
CP001999_1896 1/1 185 251 .. 1 87 [] 34.5 1.5e-09
CP001999_2083 1/1 169 231 .. 1 87 [] 34.5 1.5e-09
CP001999_2756 1/1 418 480 .. 1 87 [] 33.5 2.9e-09
CP001999_1192 1/1 647 717 .. 1 87 [] 33.4 3e-09
CP001999_0636 1/1 739 809 .. 1 87 [] 31.5 1e-08
CP001999_2559 1/1 209 267 .. 1 87 [] 31.3 1.2e-08
CP001999_1178 1/1 380 450 .. 1 87 [] 31.3 1.2e-08
CP001999_0386 1/1 518 588 .. 1 87 [] 28.4 7.8e-08
CP001999_2981 1/1 117 188 .. 1 87 [] 28.3 8.8e-08
CP001999_0390 1/1 470 540 .. 1 87 [] 27.9 1.1e-07
CP001999_0157 1/1 155 213 .. 1 87 [] 27.6 1.4e-07
CP001999_0759 1/1 312 374 .. 1 87 [] 27.2 1.8e-07

Alignments of top-scoring domains:
CP001999_1151: domain 1 of 1, from 486 to 551: score 97.3, E = 2.5e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHE+RTP+++I+g+++l+l t l+++q
CP001999_1 486 AKSEFLANMSHEIRTPMNGIIGMSHLALQ---------TRLNDKQ-- 521

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y+e+i+ +a+ ll+++nd+Ld+s+ieag
CP001999_1 522 ----------KNYIEKIDICAKNLLNILNDILDFSKIEAG 551

CP001999_2024: domain 1 of 1, from 146 to 212: score 88.0, E = 1e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f++n+sHE++TP+taI g+aelLl+ ++l +++
CP001999_2 146 MRKDFMSNVSHEIKTPVTAITGFAELLLD---------SPLEIQKQ- 182

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+eyle i++e++rl+ L +d+L++sr++++
CP001999_2 183 ----------KEYLELIHQESRRLSLLCEDMLQMSRLDNQ 212

CP001999_0355: domain 1 of 1, from 718 to 783: score 87.3, E = 1.6e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHE+RTP++++ g+++l+l+ +l + q
CP001999_0 718 VKSEFLANMSHEIRTPISGVTGLISLILD---------MPLEPLQ-- 753

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+yl++++++++ ll++ind+Ld+s+ieag
CP001999_0 754 ----------RDYLNKAKKSSNALLSIINDILDYSKIEAG 783

CP001999_1047: domain 1 of 1, from 319 to 385: score 86.6, E = 2.5e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla +sHELRTPL+aI+g++ +L++ + +++ e+
CP001999_1 319 AKSIFLARMSHELRTPLNAILGFSNILKK--------SMNATQEE-- 355

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l++i+r++e+ll++in++L+ls+ieag
CP001999_1 356 ----------KNNLNIIKRSGEHLLNIINEILELSKIEAG 385

CP001999_3107: domain 1 of 1, from 233 to 299: score 67.5, E = 6.5e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++f +++sHEL+TPLt Irg +e++l+ ++++++
CP001999_3 233 KINQFSSDASHELKTPLTIIRGEIEIALR---------KDRDSKE-- 268

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+e l++ l+e+ +++ i+dlL l++ e++
CP001999_3 269 ---------YKETLNVCLDEILLIQQTIDDLLFLAKNENN 299

CP001999_0288: domain 1 of 1, from 249 to 316: score 62.0, E = 2.3e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+e ++++sHE+++P++ I gy+++L++ d +l+e+ r
CP001999_0 249 QKDEIISAISHEFKNPIAIITGYVQTLQN--------DKDLPEQMR- 286

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l++i++ a+ + ++i+ l+ ++e+g
CP001999_0 287 ----------NKFLSKIDSNANKMTQIIDKLRLVLKLEEG 316

CP001999_0053: domain 1 of 1, from 119 to 186: score 51.2, E = 2.7e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +l +sH+LRTPL++I g + l+l + el+e +
CP001999_0 119 LRESLLHIISHDLRTPLSTIHGSINLILSN--------NELNETNK- 156

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+le i ++ r++rLi ++Ld +r+ +g
CP001999_0 157 ----------NSLLEDINYASIRMERLITNILDSTRLSSG 186

CP001999_0603: domain 1 of 1, from 207 to 273: score 44.1, E = 2.8e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k e++ +++HEL+TPL+++++ e+ l+ + +e+
CP001999_0 207 FKKELFVGAAHELKTPLAVMKLKNEVTLM---------KQREPEK-- 242

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+e l+ +++++ ++++i+ +Ld+ r e
CP001999_0 243 ---------YQETLKLNIQQINDMNKMISSILDIGRQEGA 273

CP001999_2155: domain 1 of 1, from 181 to 243: score 40.7, E = 2.7e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ + +HEL+TP++++++ a++L+e +++e++
CP001999_2 181 QMDKFIKDSAHELNTPIAVLMTSASTLKE----------GRNSEKM- 216

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+ i ++a+++++L nd+ + e+
CP001999_2 217 -------------LKYIVSSAKQISQLYNDMHYSAFSEQD 243

CP001999_1046: domain 1 of 1, from 137 to 199: score 36.0, E = 5.6e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ fl + HE++TPL+ I+++++ L++ + + eq
CP001999_1 137 QQDFFLKKIIHEMNTPLSIISLNVDNLER---------QLGPKEQ-- 172

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e i+ ++++l+++ ndl l++ ++
CP001999_1 173 -------------FEAIKASSKSLSSIYNDLYYLTKKQTM 199

CP001999_1896: domain 1 of 1, from 185 to 251: score 34.5, E = 1.5e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+ + HEL+TP++aI++++e++ + l + ++
CP001999_1 185 LLDRFIKDTTHELNTPISAIITNIEMIDI---------ASLEDVKL- 221

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l++i+ a+ +++ +dl l+
CP001999_1 222 ----------QKKLKRIDTGAKTVSNIYQDLTYLALKNKI 251

CP001999_2083: domain 1 of 1, from 169 to 231: score 34.5, E = 1.5e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f+ ++ HEL+TPL +I++++e+L+e +++++
CP001999_2 169 YLDAFFNDAMHELKTPLGVIQLNLEMLQE---------KQKDSKE-- 204

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ l+ ++ ll + +d+ l +
CP001999_2 205 -------------ISRCLNGLKNLLFIYEDIEYLIKNKRI 231

CP001999_2756: domain 1 of 1, from 418 to 480: score 33.5, E = 2.9e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ fl+++ HE +TPL++I+ ++el ++++ ++
CP001999_2 418 NQKMFLRHAVHETNTPLSVIMSNIELHEMQY-------HK------- 450

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
eyl+ i+ + +++ ++ +dl l + ++
CP001999_2 451 ----------SEYLSNIEVAMKSIFSIYDDLSYLVKKDQV 480

CP001999_1192: domain 1 of 1, from 647 to 717: score 33.4, E = 3e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e+l n++H+ R+PL+ +++ ++ L++++ + + ++e++
CP001999_1 647 AMGEMLGNIAHQWRQPLNNVSLILQFLRDNY-----KNKDVNDEKL- 687

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +++ + +e++++ i+d++ + +
CP001999_1 688 ----------DKFMNKANKHIEYMSETIDDFRNFYKPSKT 717

CP001999_0636: domain 1 of 1, from 739 to 809: score 31.5, E = 1e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e++ n++H+ R+PL++I++ + L+ +l ++ +ee++
CP001999_0 739 AMGEMIGNIAHQWRQPLSVISAVSTGLKLKLM-----VGKYDEEDI- 779

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+++ ++a++l++ i+d++ + + + +
CP001999_0 780 ----------ISSLDSMNESAQYLSQTIDDFRNFYKSDKE 809

CP001999_2559: domain 1 of 1, from 209 to 267: score 31.3, E = 1.2e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+ f++n+ HEL+TP+t ++ +e L +
CP001999_2 209 SKNLFMRNMMHELKTPITKAMFIVESLDD------------------ 237

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e++ r+ er++++i +l + +++ ++
CP001999_2 238 ----------NKNKEVLGRAFERMNNIIKELATVEKLSSN 267

CP001999_1178: domain 1 of 1, from 380 to 450: score 31.3, E = 1.2e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e++ n++H+ R+PL+ I++ a ++ ++d ++ l e +
CP001999_1 380 SMGEMIENIAHQWRQPLSFILTSATGIRLKSD-----YECLETEFL- 420

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l i++++++l++ i+d++ + + + +
CP001999_1 421 ----------KESLLGIEKSVKHLNKTIDDFRNYFKPDKE 450

CP001999_0386: domain 1 of 1, from 518 to 588: score 28.4, E = 7.8e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e++++++H+ R+P++++ + a +l++ + + + + +
CP001999_0 518 AMGEMISMIAHQWRQPIAVVAMGANNILADIE-----LDSVNNDSL- 558

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l+ i++++e+l++ i+d+ + + +
CP001999_0 559 ----------KENLDDIISQTEYLSQTIDDFKNFFKPNKE 588

CP001999_2981: domain 1 of 1, from 117 to 188: score 28.3, E = 8.8e-08
*->akseflanlsHELRTPLtaIrg...yaelLleeldkvlagdtelsee
++e++ ++sH+ ++PL++Ir++++++e+ +++l+ + +e
CP001999_2 117 LMGEMINHISHQWKQPLSVIRMsntLLEISRDKLY-------HVNEN 156

qrlpeLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ e+++ i+++++ l++ i+d++d+ +i +
CP001999_2 157 DL-----------DEAIKNIDDSVQNLSDTIDDFRDFFQINKQ 188

CP001999_0390: domain 1 of 1, from 470 to 540: score 27.9, E = 1.1e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e+l n++H+ R+PL++I ++a+ ++ + ++l+++
CP001999_0 470 SMGEMLENIAHQWRQPLSTITTAASGAKI-----KKEFGDLDDDF-- 509

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + ++ i r+a +l++ i+d++d+ + +
CP001999_0 510 ---------FYDSVDLIVRAASYLSQTIDDFRDFFKQSKN 540

CP001999_0157: domain 1 of 1, from 155 to 213: score 27.6, E = 1.4e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f+ + HEL+TP++aI++ +e el+ +q
CP001999_0 155 KLNNFIKDTTHELNTPISAILMSTEG------------KELNTKQ-- 187

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+++ +a+r +++ d L++ ++
CP001999_0 188 -------------IERVRLSAKRVSEIYKD-LTYVFLQKD 213

CP001999_0759: domain 1 of 1, from 312 to 374: score 27.2, E = 1.8e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+ n HE++TPL+ I+++++l ++ + ++
CP001999_0 312 KQKKFIKNSVHEINTPLSIIQTNLDLYKM------------NNPT-- 344

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y++ i++ a+ ++ + +dl + + +
CP001999_0 345 ----------NKYIRNIESGAKTIQYIFDDLSFMIKKDRV 374


Histogram of all scores:
score obs exp (one = represents 10 sequences)
----- --- ---
-15 1 0|=
-14 18 0|==
-13 50 2|*====
-12 183 71|=======*===========
-11 388 370|====================================*==
-10 553 687|======================================================== *
-9 584 709|==========================================================*
-8 470 531|=============================================== *
-7 322 334|=================================*
-6 222 192|===================*===
-5 110 105|==========*
-4 66 56|=====*=
-3 39 29|==*=
-2 27 15|=*=
-1 15 8|*=
0 7 4|*
1 3 2|*
2 2 1|*
3 3 0|=
4 3 0|=
5 1 0|=
6 4 0|=
7 1 0|=
8 2 0|=
9 2 0|=
10 4 0|=
11 1 0|=
12 0 0|
13 2 0|=
14 0 0|
15 2 0|=
16 2 0|=
17 1 0|=
18 4 0|=
19 1 0|=
20 1 0|=
21 1 0|=
22 3 0|=
23 1 0|=
24 1 0|=
25 1 0|=
26 3 0|=
27 3 0|=
28 2 0|=
29 0 0|
30 0 0|
31 3 0|=
32 0 0|
33 2 0|=
34 2 0|=
35 0 0|
> 36 10 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 253.9799
P(chi-square) = 0

Total sequences searched: 3126

Whole sequence top hits:
tophits_s report:
Total hits: 22
Satisfying E cutoff: 22
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 22
Satisfying E cutoff: 22
Total memory: 29K


Acknowledgements:

This research is funded by:

Developed by: