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Thermotogae
Classification of phyla is from NCBI page
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264 projects found  

1 accessions found for Moraxella catarrhalis RH4  

Data for CP002005  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP002005.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP002005_0155 CDS_168330-171296 93.6 1.7e-26 1
CP002005_1713 CDS_1704105-1703056 67.3 4.7e-19 1
CP002005_0385 CDS_400002-401705 66.0 1.1e-18 1
CP002005_0386 CDS_403161-401692 44.4 1.5e-12 1
CP002005_0178 CDS_192759-191194 43.0 3.6e-12 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP002005_0155 1/1 320 386 .. 1 87 [] 93.6 1.7e-26
CP002005_1713 1/1 119 185 .. 1 87 [] 67.3 4.7e-19
CP002005_0385 1/1 319 384 .. 1 87 [] 66.0 1.1e-18
CP002005_0386 1/1 255 313 .. 1 87 [] 44.4 1.5e-12
CP002005_0178 1/1 243 314 .. 1 87 [] 43.0 3.6e-12

Alignments of top-scoring domains:
CP002005_0155: domain 1 of 1, from 320 to 386: score 93.6, E = 1.7e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHELRTPL++I g++ lL + +el+ eq
CP002005_0 320 AKSAFLANISHELRTPLNSIDGFINLLAR--------KGELTGEQ-- 356

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y++ti++++ +ll+L+nd+Ld+s+ieag
CP002005_0 357 ----------NLYVQTIKKSSAHLLALVNDVLDFSKIEAG 386

CP002005_1713: domain 1 of 1, from 119 to 185: score 67.3, E = 4.7e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ n+sHELRTPLt+I+gy+e + + + +
CP002005_1 119 MRTDFVGNVSHELRTPLTVILGYLENFTL----------TDDIKPA- 154

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + l+ ++++a r+++LindlL lsr+e+
CP002005_1 155 ---------WMRGLKLMHEQAIRMNDLINDLLMLSRLESD 185

CP002005_0385: domain 1 of 1, from 319 to 384: score 66.0, E = 1.1e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e+++++sHELRTP++ Ir+++++L + + +e+ r
CP002005_0 319 SQRELTRAVSHELRTPVARIRFAVDMLAD----------TDDEDSR- 354

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + i++++e+l++Li+++L+++++e+g
CP002005_0 355 ----------QLQRQFIDEDIESLNELIDEILTYAKLEEG 384

CP002005_0386: domain 1 of 1, from 255 to 313: score 44.4, E = 1.5e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +la++sH+LRTPLt +r++ae+L +
CP002005_0 255 ERTIMLAGISHDLRTPLTRMRLTAEMLPD------------------ 283

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + e + ++e ++++++++ + + ++
CP002005_0 284 ----------EFFREGLVYDIEDMDAILEQFISFMKDGSD 313

CP002005_0178: domain 1 of 1, from 243 to 314: score 43.0, E = 3.6e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a s +la++sHE+RTP+t Ir+ +e++ + ++ + +e + +
CP002005_0 243 AHSLLLAHASHEFRTPITRIRLQIEMMDM----LTSQLDETTKAK-- 283

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + r++ l++L++ +L sr++ag
CP002005_0 284 ---------FDKRAAAVNRDLTGLNDLVESILLVSRLDAG 314


Histogram of all scores:
score obs exp (one = represents 6 sequences)
----- --- ---
-16 1 0|=
-15 10 0|==
-14 55 0|==========
-13 99 1|*================
-12 141 43|=======*================
-11 189 223|================================ *
-10 288 414|================================================ *
-9 334 428|======================================================== *
-8 268 320|============================================= *
-7 190 202|================================ *
-6 138 116|===================*===
-5 73 63|==========*==
-4 33 34|=====*
-3 25 18|==*==
-2 17 9|=*=
-1 8 4|*=
0 8 2|*=
1 1 1|*
2 1 0|=
3 0 0|
4 1 0|=
> 5 6 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 310.6405
P(chi-square) = 0

Total sequences searched: 1886

Whole sequence top hits:
tophits_s report:
Total hits: 5
Satisfying E cutoff: 5
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 5
Satisfying E cutoff: 5
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: