Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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132 projects found  

1 accessions found for Caulobacter segnis ATCC 21756  

Data for CP002008  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP002008.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP002008_2666 CDS_3010681-3009518 81.7 9.1e-24 1
CP002008_2029 CDS_2306111-2303082 43.6 1.5e-12 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP002008_2666 1/1 200 267 .. 1 70 [] 81.7 9.1e-24
CP002008_2029 1/1 784 850 .. 1 70 [] 43.6 1.5e-12

Alignments of top-scoring domains:
CP002008_2666: domain 1 of 1, from 200 to 267: score 81.7, E = 9.1e-24
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+RI+R+LHD +g++L+++++++ela+rl+ +d+e+a+++++++
CP002008_2 200 ERERISRDLHDLLGHTLTLVAVKAELAARLV--SRDAEAAEREMQAV 244

relarealaevRrllgdLRpaal<-*
+++areal evR ++ ++R a l
CP002008_2 245 AAAAREALGEVRTAVVGMRGASL 267

CP002008_2029: domain 1 of 1, from 784 to 850: score 43.6, E = 1.5e-12
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+RIARELHD++ Q+ +++l + a+r++ ++d +ar +l+++
CP002008_2 784 ERERIARELHDTLLQGVQGLILTFQSAARQV--PADL-PARNQLERA 827

relarealaevRrllgdLRpaal<-*
+ a+ e+R+ ++ LR ++
CP002008_2 828 LDRAEAVVVEARDRVRSLRVSVG 850


Histogram of all scores:
score obs exp (one = represents 13 sequences)
----- --- ---
-14 6 0|=
-13 50 0|====
-12 88 46|===*===
-11 163 379|============= *
-10 455 880|=================================== *
-9 731 999|========================================================= *
-8 624 770|================================================ *
-7 539 484|=====================================*====
-6 472 274|=====================*===============
-5 417 147|===========*=====================
-4 209 76|=====*===========
-3 134 39|==*========
-2 97 20|=*======
-1 60 10|*====
0 38 5|*==
1 19 2|*=
2 14 1|*=
3 5 0|=
4 3 0|=
5 4 0|=
6 2 0|=
7 0 0|
8 1 0|=
9 1 0|=
10 1 0|=
11 3 0|=
> 12 3 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 2304.9736
P(chi-square) = 0

Total sequences searched: 4139

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: