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Firmicutes Fusobacteria Gammaproteobacteria
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Thermotogae
Classification of phyla is from NCBI page
Search:
106 projects found  

1 accessions found for Bifidobacterium longum subsp. longum JDM301  

Data for CP002010  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP002010.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP002010_1417 CDS_1754800-1752938 78.6 2.9e-22 1
CP002010_0679 CDS_864894-863860 70.0 8.4e-20 1
CP002010_1387 CDS_1710923-1709367 65.4 1.6e-18 1
CP002010_1041 CDS_1276081-1277385 55.6 9.9e-16 1
CP002010_0326 CDS_417634-418965 46.4 3.9e-13 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP002010_1417 1/1 300 369 .. 1 87 [] 78.6 2.9e-22
CP002010_0679 1/1 118 182 .. 1 87 [] 70.0 8.4e-20
CP002010_1387 1/1 242 309 .. 1 87 [] 65.4 1.6e-18
CP002010_1041 1/1 195 261 .. 1 87 [] 55.6 9.9e-16
CP002010_0326 1/1 179 245 .. 1 87 [] 46.4 3.9e-13

Alignments of top-scoring domains:
CP002010_1417: domain 1 of 1, from 300 to 369: score 78.6, E = 2.9e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f++++sHELRTPL+aI gyael ++ ++d + e +
CP002010_1 300 KMKRFVSDASHELRTPLAAIHGYAELYKM------QRDMPGALERA- 339

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e +e i+r+++r+ L++dlL l+r+++g
CP002010_1 340 ----------DESIEHIERSSQRMTVLVEDLLSLARLDEG 369

CP002010_0679: domain 1 of 1, from 118 to 182: score 70.0, E = 8.4e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++an+sHELRTP++a+++++e + +++ te ++
CP002010_0 118 MRRDMIANVSHELRTPVSALQAMVENMADGV-------TEPTPAN-- 155

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le+il +++rl++Li lLdlsr+eag
CP002010_0 156 -------------LESILTQTQRLSDLIAFLLDLSRMEAG 182

CP002010_1387: domain 1 of 1, from 242 to 309: score 65.4, E = 1.6e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f++++sHELRTP+t++r++++lL++ + + ++ +
CP002010_1 242 FQKRFVSDVSHELRTPVTTMRMASDLLEM-------KKDGFDPST-- 279

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +e + ++ r ++++ dlL++sr +ag
CP002010_1 280 ----------KRTVELLAGQISRFQDMLADLLEISRYDAG 309

CP002010_1041: domain 1 of 1, from 195 to 261: score 55.6, E = 9.9e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++f++n+sHELRTP++a+ +++++ l+ + +e+
CP002010_1 195 AERRFVSNASHELRTPIAAVETNLDAPLA--------QGRFPEDV-- 231

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r ++++l++ +r +L++ lL+lsri++g
CP002010_1 232 ----------RPSVQRALDANRRGAQLVQALLTLSRIQSG 261

CP002010_0326: domain 1 of 1, from 179 to 245: score 46.4, E = 3.9e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+ n+sHEL+TP aI+++ae+ + ++ +++ +
CP002010_0 179 VRRDFVTNVSHELKTPAGAISLLAETVTD---------AADDPDAV- 215

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + +i e+ rl +L+ l dl +++++
CP002010_0 216 ----------RYFSGRISTESARLTELVHHLIDLQKAQSP 245


Histogram of all scores:
score obs exp (one = represents 6 sequences)
----- --- ---
-14 10 0|==
-13 35 1|*=====
-12 83 44|=======*======
-11 183 232|=============================== *
-10 336 430|======================================================== *
-9 350 444|==========================================================*
-8 326 333|=======================================================*
-7 267 209|==================================*==========
-6 146 120|===================*=====
-5 94 66|==========*=====
-4 58 35|=====*====
-3 28 18|==*==
-2 18 9|=*=
-1 12 5|*=
0 3 2|*
1 1 1|*
2 1 0|=
3 1 0|=
> 4 7 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 151.5482
P(chi-square) = 7.193e-27

Total sequences searched: 1959

Whole sequence top hits:
tophits_s report:
Total hits: 5
Satisfying E cutoff: 5
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 5
Satisfying E cutoff: 5
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: