Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
106 projects found  

1 accessions found for Bifidobacterium longum subsp. longum JDM301  

Data for CP002010  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP002010.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP002010_0668 CDS_850721-852208 131.1 1.9e-37 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP002010_0668 1/1 292 375 .. 1 94 [] 131.1 1.9e-37

Alignments of top-scoring domains:
CP002010_0668: domain 1 of 1, from 292 to 375: score 131.1, E = 1.9e-37
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
EIHHRVKNNLQ +S+LLrLQark+k+ ev ++ L+E+q+RV++
CP002010_0 292 EIHHRVKNNLQAVSALLRLQARKTKSDEV-----KKELQEAQRRVQT 333

mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
+A++HE L+++ d + vdf+ ++ +L++ ++++ ++++i+ +
CP002010_0 334 IAMVHEGLSQTAD-EVVDFDKVIANLLRMAVDLATMKDQHID----I 375


Histogram of all scores:
score obs exp (one = represents 8 sequences)
----- --- ---
-15 2 0|=
-14 9 0|==
-13 35 12|=*===
-12 119 128|===============*
-11 469 358|============================================*==============
-10 464 463|=========================================================*
-9 324 391|========================================= *
-8 215 262|=========================== *
-7 129 156|================= *
-6 109 86|==========*===
-5 40 46|=====*
-4 14 24|==*
-3 18 13|=*=
-2 4 6|*
-1 4 3|*
> 0 4 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 115.3220
P(chi-square) = 4.489e-20

Total sequences searched: 1959

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: