Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
76 projects found  

4 accessions found for Burkholderia sp. CCGE1002  

Data for CP002013  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP002013.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP002013_0345 CDS_378435-382682 89.5 3.9e-25 1
CP002013_2028 CDS_2339428-2338115 85.3 5.8e-24 1
CP002013_1611 CDS_1850529-1848559 70.3 1.1e-19 2
CP002013_2493 CDS_2849956-2851494 65.8 2e-18 1
CP002013_0903 CDS_1021007-1023862 64.5 4.6e-18 1
CP002013_1399 CDS_1599491-1601464 61.9 2.6e-17 1
CP002013_1198 CDS_1373031-1374713 60.7 5.6e-17 1
CP002013_1862 CDS_2147496-2146354 58.7 2.1e-16 1
CP002013_1577 CDS_1814277-1812916 57.7 4e-16 1
CP002013_3063 CDS_3462494-3464008 57.2 5.5e-16 1
CP002013_2461 CDS_2817781-2816483 51.1 3e-14 1
CP002013_0789 CDS_896144-897460 49.2 1e-13 1
CP002013_1013 CDS_1143987-1145987 43.6 3.8e-12 1
CP002013_1583 CDS_1818569-1819975 43.1 5.4e-12 1
CP002013_0030 CDS_37486-39912 39.9 4.4e-11 1
CP002013_1407 CDS_1611444-1610095 39.6 5.2e-11 1
CP002013_2298 CDS_2625006-2623867 38.3 1.2e-10 1
CP002013_0238 CDS_269985-272081 33.1 3.7e-09 1
CP002013_1853 CDS_2132050-2134575 31.6 1e-08 1
CP002013_1114 CDS_1274613-1276850 28.8 6.3e-08 1
CP002013_0054 CDS_66566-67876 27.3 1.6e-07 1
CP002013_2777 CDS_3149799-3151106 27.0 2e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP002013_0345 1/1 782 847 .. 1 87 [] 89.5 3.9e-25
CP002013_2028 1/1 206 272 .. 1 87 [] 85.3 5.8e-24
CP002013_1611 2/2 286 352 .. 1 87 [] 66.7 1.1e-18
CP002013_2493 1/1 278 343 .. 1 87 [] 65.8 2e-18
CP002013_0903 1/1 680 755 .. 1 87 [] 64.5 4.6e-18
CP002013_1399 1/1 290 356 .. 1 87 [] 61.9 2.6e-17
CP002013_1198 1/1 186 252 .. 1 87 [] 60.7 5.6e-17
CP002013_1862 1/1 152 220 .. 1 87 [] 58.7 2.1e-16
CP002013_1577 1/1 219 284 .. 1 87 [] 57.7 4e-16
CP002013_3063 1/1 237 302 .. 1 87 [] 57.2 5.5e-16
CP002013_2461 1/1 212 277 .. 1 87 [] 51.1 3e-14
CP002013_0789 1/1 219 277 .. 1 87 [] 49.2 1e-13
CP002013_1013 1/1 289 357 .. 1 87 [] 43.6 3.8e-12
CP002013_1583 1/1 245 310 .. 1 87 [] 43.1 5.4e-12
CP002013_0030 1/1 539 611 .. 1 87 [] 39.9 4.4e-11
CP002013_1407 1/1 234 293 .. 1 87 [] 39.6 5.2e-11
CP002013_2298 1/1 151 216 .. 1 87 [] 38.3 1.2e-10
CP002013_0238 1/1 440 502 .. 1 81 [. 33.1 3.7e-09
CP002013_1853 1/1 591 661 .. 1 87 [] 31.6 1e-08
CP002013_1114 1/1 520 590 .. 1 87 [] 28.8 6.3e-08
CP002013_0054 1/1 201 270 .. 1 87 [] 27.3 1.6e-07
CP002013_2777 1/1 215 268 .. 1 82 [. 27.0 2e-07

Alignments of top-scoring domains:
CP002013_0345: domain 1 of 1, from 782 to 847: score 89.5, E = 3.9e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ f+a++sHE+RTP+++++g++e+L++ t+ls +q
CP002013_0 782 AKDNFFAMMSHEIRTPMNGVLGLVEVLER---------TPLSTDQ-- 817

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+l i+++a ll++++dlLd+s+ieag
CP002013_0 818 ----------SEMLGMIHESAGALLQILDDLLDYSKIEAG 847

CP002013_2028: domain 1 of 1, from 206 to 272: score 85.3, E = 5.8e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+an+sHEL+TPLt+++g++e+++e +l+e +r
CP002013_2 206 MRRDFVANVSHELKTPLTVLSGFLETMRE---------LPLGEAER- 242

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+ ++++a r++++++dlL l+ +e
CP002013_2 243 ----------ARYLDLMEQQASRMRHIVSDLLVLATLEGD 272

CP002013_1611: domain 2 of 2, from 286 to 352: score 66.7, E = 1.1e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++efla+l+HELR+PL+ +r ++ ++++ +++ls+
CP002013_1 286 RMREFLATLAHELRNPLAPVRNAVGTMQM--------EANLSPVV-- 322

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ + i+r++ +l rL++dlLd+ ri +
CP002013_1 323 ----------ARARDLIDRQVTHLTRLVDDLLDIGRIMSD 352

CP002013_2493: domain 1 of 1, from 278 to 343: score 65.8, E = 2e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+a+++H+++TPL+++r+ ael+l+ +++++e
CP002013_2 278 LQKRFIADAAHQMKTPLAGLRTQAELALR---------QNAPAEV-- 313

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ le i ++e+ rL+ +lL l+r+e+
CP002013_2 314 ----------HRSLEQIATSSEHAARLVTQLLALARAENR 343

CP002013_0903: domain 1 of 1, from 680 to 755: score 64.5, E = 4.6e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +l+++sH+LRTPLt+I g++++L g++ +++ + +
CP002013_0 680 LRNSLLSAISHDLRTPLTTIVGFSSMLAQ-------GRGGQGPTDPQ 719

peLR.ledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + e++e i++ea r+ ++ +lLd++r++ag
CP002013_0 720 SAAHrN-----DELVEAIHEEALRMTGIVTNLLDMARLQAG 755

CP002013_1399: domain 1 of 1, from 290 to 356: score 61.9, E = 2.6e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++fla+lsHELRTPLt +++ a++L++ + +eq+
CP002013_1 290 AKDRFLAMLSHELRTPLTPVLAGASVLEM---------IPELPEQA- 326

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r ++ i+r +e rLi+dlLdl+r +g
CP002013_1 327 ----------RASVRMIRRNVELEARLIDDLLDLTRVANG 356

CP002013_1198: domain 1 of 1, from 186 to 252: score 60.7, E = 5.6e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +ef+a+l+HELR+P++ I g++ ++++ l+ +++
CP002013_1 186 RHNEFIAMLAHELRNPMAPIDGAIAAAKR---------LVLDNDKA- 222

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l +++r+ ++l+ L++dlLd +r+ +g
CP002013_1 223 ----------DAVLTIAQRQMKHLRTLVDDLLDAARLKHG 252

CP002013_1862: domain 1 of 1, from 152 to 220: score 58.7, E = 2.1e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++nl+HE+++PL +Irg+a+lL+ el+e qr
CP002013_1 152 VNKHLIRNLAHEIKNPLGGIRGAAQLLEF----------ELGERQR- 187

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+eL rey+++i++e++rl+ L+++lL+ r +
CP002013_1 188 DEL-------REYTQVIIKESDRLQTLVDRLLEPHRHPHI 220

CP002013_1577: domain 1 of 1, from 219 to 284: score 57.7, E = 4e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ f+a+++HELR PL+a+++ ++++ + + +
CP002013_1 219 AQRTFIADAAHELRSPLAALKLQLQAASR---------DGSLKGE-- 254

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ le++ + ++r+ +L+++lL+l+r +a+
CP002013_1 255 ----------GQTLERVASRVNRIIHLVQQLLTLAREDAQ 284

CP002013_3063: domain 1 of 1, from 237 to 302: score 57.2, E = 5.5e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+a+++H+LRTPLta++++ae + +++++q+
CP002013_3 237 AQRKFIADAAHQLRTPLTAVKLHAEQAVV----------ARDPQQT- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ ++ +a+r rL n+lL l+r+e g
CP002013_3 273 ----------LAAVHELRAAADRAVRLSNQLLSLARAEPG 302

CP002013_2461: domain 1 of 1, from 212 to 277: score 51.1, E = 3e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ f+a+++HELRTPL+a++ a+l + ++++ r
CP002013_2 212 IQKAFVADAAHELRTPLAAVQIQAQLVAR----------AKDDTAR- 247

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+l ++ + r rL ++lL l+r+e
CP002013_2 248 ----------GEALADLQAGVTRATRLAEQLLALARAEPD 277

CP002013_0789: domain 1 of 1, from 219 to 277: score 49.2, E = 1e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +la+++H+L+TPL+ +r+ ae++ +
CP002013_0 219 DRAVMLAGVAHDLKTPLARLRLRAEMMDD------------------ 247

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + + r+++++ ++++++L ++ +a
CP002013_0 248 ----------AKTRDGVVRDVDSMTHIVEQFLLFAHDGAD 277

CP002013_1013: domain 1 of 1, from 289 to 357: score 43.6, E = 3.8e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla+++H+LR+P++a+ +++ ++ e l ++++ e+
CP002013_1 289 AKSRFLAAAAHDLRQPMHALNMFLAAADEAL-------AKRDIETS- 327

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +++++ rL n +Ldls++e+g
CP002013_1 328 ----------TALIGDARKASALSARLFNAVLDLSKLESG 357

CP002013_1583: domain 1 of 1, from 245 to 310: score 43.1, E = 5.4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ f+a+++HEL+TPL+aI+ a+++l+ e + +
CP002013_1 245 LERAFTADAAHELKTPLAAIKVQAQVALA----------EPDIGLQ- 280

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + e++ + ++r rL ++lL l+r++ +
CP002013_1 281 ----------RLAMERVVQGVDRSARLAEQLLLLARLDVQ 310

CP002013_0030: domain 1 of 1, from 539 to 611: score 39.9, E = 4.4e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e ++ l+HE+++PLt I++ ae L+++l ++l + + +
CP002013_0 539 AWGEVARRLAHEIKNPLTPIQLSAERLQMKLA------DKLAPSD-A 578

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ L ++ ti +++ + ++++d++d++r
CP002013_0 579 DVL-------KRGATTIVNQVAAMKQMVDDFRDYARTPPA 611

CP002013_1407: domain 1 of 1, from 234 to 293: score 39.6, E = 5.2e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +la++sH+LRTPL+ +r+ +e+ +
CP002013_1 234 DRALMLAGISHDLRTPLARLRLETEMSPSD----------------- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + +++e+++ +i ++Ld++r +
CP002013_1 264 ----------QATKDAMVDDIEQMDMIIGRFLDYARPVQR 293

CP002013_2298: domain 1 of 1, from 151 to 216: score 38.3, E = 1.2e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +l +l H++R PL aI++++ L + +++ +
CP002013_2 151 DRNLLLGMLGHDMRSPLQAIQMTSAYLAA---------LNAGGKV-- 186

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ +++r++ r+++L++dl d+ r g
CP002013_2 187 ----------SEAAARLIRSGARMQALLDDLTDFNRTKLG 216

CP002013_0238: domain 1 of 1, from 440 to 502: score 33.1, E = 3.7e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++a++ HEL++PL+a+r +++ + l+ +
CP002013_0 440 ALGQMAAGITHELNQPLAALRSFSDNTRVLLE------RGDQASA-- 478

peLRledpeyreyletilreaerllrLindlLdl<-*
re le i +er+ ++ n+l +
CP002013_0 479 ----------RENLEAIAALTERMGKITNQLKLF 502

CP002013_1853: domain 1 of 1, from 591 to 661: score 31.6, E = 1e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++++l+HEL++PL+aI y++ + l +++ +++ +
CP002013_1 591 TMGEMASSLAHELNQPLAAINNYCSGTVA-----LVKSGRTTPDNL- 631

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le+ ++a r +i +++++ + ++
CP002013_1 632 ----------LPVLEKTAQQAVRAGMIIKRIREFVKRSEP 661

CP002013_1114: domain 1 of 1, from 520 to 590: score 28.8, E = 6.3e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ ++a+++HE ++PL++I ++a+++l+ + +++ e +
CP002013_1 520 SLGALTASIAHEVNQPLSGIVTNASTCLR-----MLAAVPANIEGA- 560

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e ++ +r+++r + i +l+ l ++
CP002013_1 561 ----------QETARRTIRDGNRAADVIARLRALFSRRSV 590

CP002013_0054: domain 1 of 1, from 201 to 270: score 27.3, E = 1.6e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ +a+++HE+ TPL++I +++e L++ +++++ ++
CP002013_0 201 ALGVQAATVAHEIGTPLSTIAMLSEELRD---------AARTDAGLA 238

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
p+ r le ++++ + + + +l+ + ++
CP002013_0 239 PY--------RADLELLEQQMTLCTSALARLRSRATTTTN 270

CP002013_2777: domain 1 of 1, from 215 to 268: score 27.0, E = 2e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +la+++H+L+ PLt +++ a++L +
CP002013_2 215 DQAVMLAGVAHDLKAPLTRLKLRASVLVD------------------ 243

peLRledpeyreyletilreaerllrLindlLdls<-*
+ ++r++++l ++++++L+++
CP002013_2 244 ----------ENERAGLIRDVDSLTNIVQQFLEFA 268


Histogram of all scores:
score obs exp (one = represents 12 sequences)
----- --- ---
-14 8 0|=
-13 46 2|*===
-12 126 71|=====*=====
-11 265 369|======================= *
-10 471 685|======================================== *
-9 661 707|======================================================== *
-8 558 529|============================================*==
-7 394 333|===========================*=====
-6 258 192|===============*======
-5 134 105|========*===
-4 82 56|====*==
-3 35 29|==*
-2 23 15|=*
-1 14 8|*=
0 7 4|*
1 5 2|*
2 3 1|*
3 1 0|=
> 4 25 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 204.4595
P(chi-square) = 8.826e-38

Total sequences searched: 3116

Whole sequence top hits:
tophits_s report:
Total hits: 22
Satisfying E cutoff: 22
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 22
Satisfying E cutoff: 22
Total memory: 29K


Acknowledgements:

This research is funded by:

Developed by: