Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
76 projects found  

4 accessions found for Burkholderia sp. CCGE1002  

Data for CP002015  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP002015.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP002015_1096 CDS_1267720-1264892 91.7 3.3e-26 1
CP002015_1030 CDS_1171658-1169052 75.0 1.8e-21 1
CP002015_1057 CDS_1208220-1210268 61.1 1.5e-17 1
CP002015_0828 CDS_962928-958846 57.1 2.1e-16 1
CP002015_0178 CDS_207861-209186 51.3 9.3e-15 1
CP002015_0521 CDS_597437-602944 43.4 1.6e-12 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP002015_1096 1/1 479 545 .. 1 87 [] 91.7 3.3e-26
CP002015_1030 1/1 502 568 .. 1 87 [] 75.0 1.8e-21
CP002015_1057 1/1 308 375 .. 1 87 [] 61.1 1.5e-17
CP002015_0828 1/1 997 1065 .. 1 87 [] 57.1 2.1e-16
CP002015_0178 1/1 218 283 .. 1 87 [] 51.3 9.3e-15
CP002015_0521 1/1 1609 1679 .. 1 87 [] 43.4 1.6e-12

Alignments of top-scoring domains:
CP002015_1096: domain 1 of 1, from 479 to 545: score 91.7, E = 3.3e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aksefla++sHELRTPL++I+gya++L++ dt+l+ q
CP002015_1 479 AKSEFLAHMSHELRTPLNGILGYAQILKR--------DTTLDQHQ-- 515

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l +i+r++e+ll Li+d+Ld+++ieag
CP002015_1 516 ----------LDGLTVIQRSGEHLLTLIDDILDIAKIEAG 545

CP002015_1030: domain 1 of 1, from 502 to 568: score 75.0, E = 1.8e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+efla+l+HELR+PL+ +r+++ lL + ++ ++
CP002015_1 502 RKDEFLAMLAHELRNPLAPLRTAIALLDK---------QPGTASRP- 538

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+++ ++r++e++ r+++dlL+ sri +g
CP002015_1 539 ----------QELINLMRRQVEHMTRIVDDLLEVSRITQG 568

CP002015_1057: domain 1 of 1, from 308 to 375: score 61.1, E = 1.5e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+ fla+l+HELR+PL+ +r +a+lL + ++ s++
CP002015_1 308 RKDIFLATLAHELRNPLAPVRNAAHLLGHSA-------GADSAKR-- 345

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + ++i+r++ +l++Li+dlLd sri +g
CP002015_1 346 ----------EWLRNVIERQTGHLSHLIDDLLDVSRITTG 375

CP002015_0828: domain 1 of 1, from 997 to 1065: score 57.1, E = 2.1e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++efla +sHEL+ PL+ I++ ael+ + a +t ++
CP002015_0 997 RRDEFLAVVSHELKHPLNLISASAELIAR------APETRQNLNV-- 1035

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ti+r + ++i+dlLd+sr ++g
CP002015_0 1036 ----------SRATDTIRRTVIGQAQIIDDLLDISRVRTG 1065

CP002015_0178: domain 1 of 1, from 218 to 283: score 51.3, E = 9.3e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +f+a+++HELRTP++a+++ ++ L + ++ +
CP002015_0 218 AEKRFVADAAHELRTPIAAMQLRVDNLVN---------APDEAAR-- 253

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e l+ +++++ r + +i++lL l+r++a+
CP002015_0 254 ----------SERLRELREAIARASTMIRQLLSLARADAQ 283

CP002015_0521: domain 1 of 1, from 1609 to 1679: score 43.4, E = 1.6e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++a+++HEL +P+ta ++ae++l++l +++++ ++
CP002015_0 1609 TMGQLAASIAHELSQPVTATVANAEAALRWLA-----REPADLGEA- 1649

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++l++i+r+++r + + ++++l r
CP002015_0 1650 ----------RRALDRIIRDSNRAGDVLGRIRQLVRKAPR 1679


Histogram of all scores:
score obs exp (one = represents 4 sequences)
----- --- ---
-14 6 0|==
-13 19 0|=====
-12 41 25|======*====
-11 113 131|============================= *
-10 192 243|================================================ *
-9 209 251|===================================================== *
-8 182 188|==============================================*
-7 138 118|=============================*=====
-6 96 68|================*=======
-5 49 37|=========*===
-4 34 20|====*====
-3 7 10|==*
-2 9 5|=*=
-1 0 2|*
0 3 1|*
1 1 0|=
2 0 0|
> 3 10 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 61.5669
P(chi-square) = 1.829e-09

Total sequences searched: 1109

Whole sequence top hits:
tophits_s report:
Total hits: 6
Satisfying E cutoff: 6
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 6
Satisfying E cutoff: 6
Total memory: 23K


Acknowledgements:

This research is funded by:

Developed by: