Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
76 projects found  

4 accessions found for Burkholderia sp. CCGE1002  

Data for CP002016  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP002016.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP002016_0269 CDS_365514-367202 62.7 2.1e-18 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP002016_0269 1/1 190 255 .. 1 87 [] 62.7 2.1e-18

Alignments of top-scoring domains:
CP002016_0269: domain 1 of 1, from 190 to 255: score 62.7, E = 2.1e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sH+LR+PL+a+ ++a L + + +
CP002016_0 190 AKSQFLAAASHDLRQPLHALGLFAAGLTS---------AVREPSV-- 225

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +i +++e l++L n+lLdls+++ag
CP002016_0 226 ----------LGIVAKINDCTETLEELFNELLDLSKLDAG 255


Histogram of all scores:
score obs exp (one = represents 2 sequences)
----- --- ---
-14 4 0|==
-13 7 0|====
-12 17 9|====*====
-11 48 48|=======================*
-10 70 89|=================================== *
-9 79 92|======================================== *
-8 73 69|==================================*==
-7 47 43|=====================*==
-6 26 25|============*
-5 12 13|======*
-4 8 7|===*
-3 6 3|=*=
-2 1 2|*
-1 5 1|*==
0 1 0|=
> 1 2 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 13.3013
P(chi-square) = 0.1019

Total sequences searched: 406

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: