Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
76 projects found  

3 accessions found for Thiomonas intermedia K12  

Data for CP002021  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP002021.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP002021_1670 CDS_1844687-1843311 88.6 7.2e-25 1
CP002021_2604 CDS_2852322-2850823 67.0 9e-19 1
CP002021_0067 CDS_69926-72670 66.9 9.7e-19 1
CP002021_0661 CDS_737934-736564 64.6 4.4e-18 1
CP002021_1389 CDS_1529053-1530138 62.7 1.5e-17 1
CP002021_1250 CDS_1368115-1369575 61.4 3.5e-17 1
CP002021_2827 CDS_3074473-3076776 60.0 8.6e-17 1
CP002021_1797 CDS_1980967-1982307 54.1 4.2e-15 1
CP002021_1336 CDS_1467497-1466151 50.7 3.8e-14 1
CP002021_0801 CDS_887921-886806 49.3 9.6e-14 1
CP002021_0506 CDS_556103-557767 48.7 1.4e-13 1
CP002021_0053 CDS_54421-52958 40.2 3.7e-11 1
CP002021_2241 CDS_2469191-2471626 39.5 5.8e-11 2
CP002021_2983 CDS_3251433-3252872 37.5 2e-10 1
CP002021_1102 CDS_1205668-1207038 35.2 9.5e-10 1
CP002021_2977 CDS_3244661-3246157 35.1 9.9e-10 1
CP002021_3001 CDS_3267860-3269221 30.2 2.5e-08 2

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP002021_1670 1/1 206 272 .. 1 87 [] 88.6 7.2e-25
CP002021_2604 1/1 266 331 .. 1 87 [] 67.0 9e-19
CP002021_0067 1/1 669 740 .. 1 87 [] 66.9 9.7e-19
CP002021_0661 1/1 216 281 .. 1 87 [] 64.6 4.4e-18
CP002021_1389 1/1 137 202 .. 1 87 [] 62.7 1.5e-17
CP002021_1250 1/1 265 331 .. 1 87 [] 61.4 3.5e-17
CP002021_2827 1/1 517 589 .. 1 87 [] 60.0 8.6e-17
CP002021_1797 1/1 224 289 .. 1 87 [] 54.1 4.2e-15
CP002021_1336 1/1 232 291 .. 1 87 [] 50.7 3.8e-14
CP002021_0801 1/1 163 228 .. 1 87 [] 49.3 9.6e-14
CP002021_0506 1/1 338 404 .. 1 87 [] 48.7 1.4e-13
CP002021_0053 1/1 259 327 .. 1 87 [] 40.2 3.7e-11
CP002021_2241 1/2 559 629 .. 1 87 [] 38.3 1.2e-10
CP002021_2983 1/1 272 330 .. 1 87 [] 37.5 2e-10
CP002021_1102 1/1 238 299 .. 1 87 [] 35.2 9.5e-10
CP002021_2977 1/1 291 357 .. 1 87 [] 35.1 9.9e-10
CP002021_3001 1/2 204 248 .. 1 68 [. 26.9 2.1e-07

Alignments of top-scoring domains:
CP002021_1670: domain 1 of 1, from 206 to 272: score 88.6, E = 7.2e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+an+sHE++TPLt++ g++e++++ +l+e qr
CP002021_1 206 MRRDFVANVSHEIKTPLTVLGGFVETMRD---------MPLDETQR- 242

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+ ++ +++r+++L++dlL l+r+e
CP002021_1 243 ----------LRVLDMMQTQSDRMRHLVDDLLALARLEGD 272

CP002021_2604: domain 1 of 1, from 266 to 331: score 67.0, E = 9e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+a+++H+++TPL+++r+ ael+++ ++ +++
CP002021_2 266 TQKRFIADAAHQIKTPLAGLRMQAELAQR---------ETDPADL-- 301

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l+ i r++er rL+n+lL l+r+e++
CP002021_2 302 ----------RASLRQIGRSVERTTRLVNQLLALTRAENQ 331

CP002021_0067: domain 1 of 1, from 669 to 740: score 66.9, E = 9.7e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +l++lsH+LRTPLta+ g+ae+L ++l ++ ++ +++
CP002021_0 669 MRNSLLSALSHDLRTPLTALVGTAEVLSTRL-------AAHPPGDAA 708

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + ++l++++rl r+++dlLd++r+++g
CP002021_0 709 TL--------HGQALSLLQQSRRLARMVDDLLDMARLQSG 740

CP002021_0661: domain 1 of 1, from 216 to 281: score 64.6, E = 4.4e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f+a+++HELR PL+a++ +++L + + ++ qr
CP002021_0 216 TQRMFVADAAHELRSPLAALKVQVQMLGR----------AHDDAQR- 251

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l ++++ ++r ++L+++lL l+r e+g
CP002021_0 252 ----------GVALARLESGIDRASHLVEQLLLLARNESG 281

CP002021_1389: domain 1 of 1, from 137 to 202: score 62.7, E = 1.5e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a e+++nl+HE+++PL ++rg+a+lL + el++ ++
CP002021_1 137 ANKELIRNLAHEIKNPLGGLRGAAQLLHA----------ELPSAEL- 172

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ey+++i+ ea+rl+ L+++lL r +
CP002021_1 173 ----------QEYTQVIIAEADRLQTLVDRLLAPHRKPHV 202

CP002021_1250: domain 1 of 1, from 265 to 331: score 61.4, E = 3.5e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ s+f a+++HELRTP+t + g +e++l ++ + +
CP002021_1 265 RISQFSADMAHELRTPITNLWGGLEVALG---------RPREPGE-- 300

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yre+le++ +e erl+++i+ lL l++ e++
CP002021_1 301 ---------YREALESAVEECERLSQMIQTLLFLAQTEHP 331

CP002021_2827: domain 1 of 1, from 517 to 589: score 60.0, E = 8.6e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a e ++ l+HE+++PLt I++ ae L+++l ++l +r
CP002021_2 517 AWAEVARRLAHEIKNPLTPIQLSAERLQMKLA------AKLEGADR- 556

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++L ++ + ti ++++ +++++nd++d++r+ ag
CP002021_2 557 DML-------QRSTTTIVNQVQAMQHMVNDFRDYARLPAG 589

CP002021_1797: domain 1 of 1, from 224 to 289: score 54.1, E = 4.2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a+++HELRTP++++++ ++ L+ l ++
CP002021_1 224 QQRRFVADAAHELRTPIAVLSMQVDNLKP---------LQLEPQA-- 259

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ + +++ ++r + +++lL l+r + +
CP002021_1 260 ----------RQRIGALQDGLRRARTVVEQLLSLARSQGE 289

CP002021_1336: domain 1 of 1, from 232 to 291: score 50.7, E = 3.8e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la++sH++RTPL+ +r+ ae+ +eq+
CP002021_1 232 ERALMLAGISHDIRTPLARLRLEAEMSVP-------------DEQA- 264

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e i++++e+ +r+i+ +L+++r ++
CP002021_1 265 -------------REYIIEDIEQADRIISKFLEYARSTTP 291

CP002021_0801: domain 1 of 1, from 163 to 228: score 49.3, E = 9.6e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +la+ sHELRTPLt +r+ +e+L + + ++ r
CP002021_0 163 SHKSLLAYTSHELRTPLTRLRLSLETLAT----------PVPAAAR- 198

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +++++ l++Li+d+L sr++a
CP002021_0 199 ----------DVAARAAKHDLAELDALIDDILLSSRLDAA 228

CP002021_0506: domain 1 of 1, from 338 to 404: score 48.7, E = 1.4e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++a+++HE+R+PL aI + +l++e + ++ q+
CP002021_0 338 AMGRLVASVAHEIRNPLGAIGQANQLARE---------FAGDAAQL- 374

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ + i + +er++r ++d+L+l r
CP002021_0 375 ----------ERLHHLIGQNVERINRTVEDVLELGRTAPR 404

CP002021_0053: domain 1 of 1, from 259 to 327: score 40.2, E = 3.7e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k ++l+++sHEL+TPL++++ ++lL e++ ++l++eq
CP002021_0 259 QKIQLLRHVSHELKTPLASMKEGVDLLAEGV------PGPLNAEQ-- 297

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++++++ ++ l + i+ l + + +
CP002021_0 298 ----------QSITRIMRGNVRDLHHRIDSLIHYDSALHH 327

CP002021_2241: domain 1 of 2, from 559 to 629: score 38.3, E = 1.2e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++++l+HEL++PLtaI+ y++ + +++ + + ++ +++
CP002021_2 559 TMGEMASSLAHELNQPLTAISNYSSGMIARV-----KTHGMTQQEL- 599

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++le+ r+a+r i +++d+ + ++
CP002021_2 600 ----------IDALEKTGRQAQRAAGVIKRVRDFVKKSEP 629

CP002021_2983: domain 1 of 1, from 272 to 330: score 37.5, E = 2e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ ++++sH+L+TP+t +r+ aelL +
CP002021_2 272 DRTRIFSAMSHDLKTPITRMRLRAELLDD------------------ 300

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + ++++ +++++ Ld+ r +
CP002021_2 301 ----------DDVRARFEKDLLEMEQMVKYTLDFMRGLDQ 330

CP002021_1102: domain 1 of 1, from 238 to 299: score 35.2, E = 9.5e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ +l ++sH+LR PL+ Ir ++el ++ + ++e
CP002021_1 238 ARTTLLVGVSHDLRSPLARIRVALELQRM----------APTPER-- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+ i+r++ ++rLi ++L l+r
CP002021_1 273 -------------LDQIERDVLAMDRLIGEVLALARGLRA 299

CP002021_2977: domain 1 of 1, from 291 to 357: score 35.1, E = 9.9e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++a+ +HE+++PL +++ ++ ++++ + ++ +
CP002021_2 291 AAGALAAATAHEINNPLGGMLNALRTAKR--------FGQFDATT-- 327

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ ++r +e+l+++ + lL +r ++
CP002021_2 328 ----------GQAIDLLDRGLEQLRSIAQTLLAQTRPDER 357

CP002021_3001: domain 1 of 2, from 204 to 248: score 26.9, E = 2.1e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++a+++HEL++P++ + g+ ++L++++ ++l
CP002021_3 204 SLGRLVAGVAHELNNPISFVFGNMHTLKRYG-------AHL------ 237

peLRledpeyreyletilrea<-*
r+yle ++r a
CP002021_3 238 ----------RDYLELVQRGA 248


Histogram of all scores:
score obs exp (one = represents 10 sequences)
----- --- ---
-14 7 0|=
-13 31 2|*===
-12 118 70|======*=====
-11 318 368|================================ *
-10 439 683|============================================ *
-9 590 705|==========================================================*
-8 572 528|====================================================*=====
-7 413 332|=================================*========
-6 258 191|===================*======
-5 151 105|==========*=====
-4 69 56|=====*=
-3 47 29|==*==
-2 28 15|=*=
-1 19 8|*=
0 13 4|*=
1 5 2|*
2 3 1|*
3 2 0|=
4 3 0|=
> 5 20 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 247.4521
P(chi-square) = 0

Total sequences searched: 3106

Whole sequence top hits:
tophits_s report:
Total hits: 17
Satisfying E cutoff: 17
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 17
Satisfying E cutoff: 17
Total memory: 27K


Acknowledgements:

This research is funded by:

Developed by: