Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
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Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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132 projects found  

1 accessions found for Starkeya novella DSM 506  

Data for CP002026  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP002026.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP002026_0733 CDS_768046-765734 95.2 1.4e-26 1
CP002026_0948 CDS_1005746-1008247 90.5 2.9e-25 1
CP002026_1961 CDS_2099083-2096723 90.4 3e-25 1
CP002026_0606 CDS_649246-646622 90.0 3.9e-25 1
CP002026_2377 CDS_2539004-2535615 81.9 7.8e-23 1
CP002026_3971 CDS_4269933-4271231 81.4 1.1e-22 1
CP002026_1517 CDS_1599971-1602682 73.7 1.6e-20 1
CP002026_1035 CDS_1088566-1090158 69.2 3.1e-19 1
CP002026_0297 CDS_288476-290995 68.0 6.6e-19 1
CP002026_1160 CDS_1219481-1216827 65.9 2.8e-18 1
CP002026_4305 CDS_4632355-4634211 65.2 4.3e-18 1
CP002026_1751 CDS_1863872-1862742 55.1 3.1e-15 1
CP002026_1221 CDS_1286528-1287880 54.5 4.4e-15 1
CP002026_0081 CDS_73334-69762 51.1 4.1e-14 1
CP002026_1749 CDS_1861106-1858902 47.8 3.5e-13 1
CP002026_3689 CDS_3969097-3970551 45.6 1.5e-12 1
CP002026_0088 CDS_78943-80094 45.3 1.9e-12 1
CP002026_0730 CDS_759990-761399 45.2 2e-12 1
CP002026_4046 CDS_4349897-4348002 43.7 5.1e-12 1
CP002026_2211 CDS_2355382-2352863 42.8 9.3e-12 1
CP002026_2562 CDS_2727557-2725248 42.0 1.6e-11 1
CP002026_0558 CDS_591994-590642 41.0 3e-11 1
CP002026_3129 CDS_3350194-3351549 40.6 4.1e-11 1
CP002026_1287 CDS_1366282-1364021 38.8 1.3e-10 1
CP002026_2416 CDS_2577622-2579004 38.2 1.9e-10 1
CP002026_1154 CDS_1210868-1212220 36.8 4.7e-10 1
CP002026_1954 CDS_2087747-2090308 35.5 1.1e-09 1
CP002026_4229 CDS_4543932-4545875 34.1 2.8e-09 2
CP002026_3982 CDS_4281689-4283062 33.6 3.8e-09 1
CP002026_2370 CDS_2529366-2527039 32.3 8.8e-09 1
CP002026_1267 CDS_1340727-1339276 29.7 4.8e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP002026_0733 1/1 529 598 .. 1 87 [] 95.2 1.4e-26
CP002026_0948 1/1 195 260 .. 1 87 [] 90.5 2.9e-25
CP002026_1961 1/1 271 339 .. 1 87 [] 90.4 3e-25
CP002026_0606 1/1 642 711 .. 1 87 [] 90.0 3.9e-25
CP002026_2377 1/1 676 742 .. 1 87 [] 81.9 7.8e-23
CP002026_3971 1/1 200 267 .. 1 87 [] 81.4 1.1e-22
CP002026_1517 1/1 667 735 .. 1 87 [] 73.7 1.6e-20
CP002026_1035 1/1 293 360 .. 1 87 [] 69.2 3.1e-19
CP002026_0297 1/1 607 675 .. 1 87 [] 68.0 6.6e-19
CP002026_1160 1/1 660 727 .. 1 87 [] 65.9 2.8e-18
CP002026_4305 1/1 368 433 .. 1 87 [] 65.2 4.3e-18
CP002026_1751 1/1 142 206 .. 1 87 [] 55.1 3.1e-15
CP002026_1221 1/1 231 296 .. 1 87 [] 54.5 4.4e-15
CP002026_0081 1/1 825 890 .. 1 87 [] 51.1 4.1e-14
CP002026_1749 1/1 489 560 .. 1 87 [] 47.8 3.5e-13
CP002026_3689 1/1 254 324 .. 1 87 [] 45.6 1.5e-12
CP002026_0088 1/1 157 227 .. 1 87 [] 45.3 1.9e-12
CP002026_0730 1/1 237 303 .. 1 87 [] 45.2 2e-12
CP002026_4046 1/1 404 474 .. 1 87 [] 43.7 5.1e-12
CP002026_2211 1/1 460 526 .. 1 87 [] 42.8 9.3e-12
CP002026_2562 1/1 386 452 .. 1 87 [] 42.0 1.6e-11
CP002026_0558 1/1 241 299 .. 1 87 [] 41.0 3e-11
CP002026_3129 1/1 245 302 .. 1 87 [] 40.6 4.1e-11
CP002026_1287 1/1 525 595 .. 1 87 [] 38.8 1.3e-10
CP002026_2416 1/1 257 315 .. 1 87 [] 38.2 1.9e-10
CP002026_1154 1/1 228 293 .. 1 87 [] 36.8 4.7e-10
CP002026_1954 1/1 494 561 .. 1 87 [] 35.5 1.1e-09
CP002026_4229 2/2 428 496 .. 1 87 [] 33.9 3.2e-09
CP002026_3982 1/1 213 279 .. 1 87 [] 33.6 3.8e-09
CP002026_2370 1/1 408 475 .. 1 87 [] 32.3 8.8e-09
CP002026_1267 1/1 263 329 .. 1 87 [] 29.7 4.8e-08

Alignments of top-scoring domains:
CP002026_0733: domain 1 of 1, from 529 to 598: score 95.2, E = 1.4e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHELRTPL+aI+g++el++ +l+ ++l++++
CP002026_0 529 AKSEFLANMSHELRTPLNAIIGFSELMESGLF------GPLGSDK-- 567

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y ey + i++++++ll+ ind+Ld+srieag
CP002026_0 568 ---------YNEYCRDIRDSGRYLLDVINDILDMSRIEAG 598

CP002026_0948: domain 1 of 1, from 195 to 260: score 90.5, E = 2.9e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHELRTPLtaI g++ lL++ t l ++q
CP002026_0 195 AKSLFLASVSHELRTPLTAIVGMTGLLRT---------TSLASDQ-- 230

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re++et++ ++++l++Li+ lLdlsrieag
CP002026_0 231 ----------REMIETVEVATRSLRSLIDGLLDLSRIEAG 260

CP002026_1961: domain 1 of 1, from 271 to 339: score 90.4, E = 3e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks flan+sHELRTPL+aI+gy+e+L e++ ++ + +
CP002026_1 271 VKSAFLANMSHELRTPLNAIIGYSEILSEDA-------ADDGNTAM- 309

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l++i++++++ll Lind+Ldls+ieag
CP002026_1 310 ----------VADLDKIQSAGKHLLGLINDILDLSKIEAG 339

CP002026_0606: domain 1 of 1, from 642 to 711: score 90.0, E = 3.9e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla +sHE+RTPL+aI+g++e++ e + ++ +
CP002026_0 642 AKSDFLAKISHEIRTPLNAIIGFSEVMME------ERFGAIENQR-- 680

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr+yl+ i++++e+l +LindlLdls+ieag
CP002026_0 681 ---------YRDYLRDIHSSGEHLISLINDLLDLSKIEAG 711

CP002026_2377: domain 1 of 1, from 676 to 742: score 81.9, E = 7.8e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+ + ++sHELRTPL+aI+gya+lL++ dt ++
CP002026_2 676 AKSRYVVGISHELRTPLNAILGYAQLLER--------DTSIPPHR-- 712

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+++++++r+ae+l+ Li+ lLd+s+ieag
CP002026_2 713 ----------RDAIRVVRRSAEHLSGLIDGLLDISKIEAG 742

CP002026_3971: domain 1 of 1, from 200 to 267: score 81.4, E = 1.1e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+an+sHELRTPL++++g++e+L+ +++++ ++
CP002026_3 200 MRVDFIANASHELRTPLASLSGFIETLQG---------PARNDANAR 237

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+++ ++a+r++rLi+dlL lsrie +
CP002026_3 238 ----------ERFLKIMGEQARRMSRLIDDLLSLSRIELN 267

CP002026_1517: domain 1 of 1, from 667 to 735: score 73.7, E = 1.6e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la++sH++RTPL++I+g+a L +++ ++ ++e r
CP002026_1 667 VRNILLASISHDFRTPLASILGAATSLIDYG-------PDIPPEVR- 705

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++l +++eae l++++++lL ++r+eag
CP002026_1 706 ----------RDLLAQMRDEAENLDHMVRNLLSMTRLEAG 735

CP002026_1035: domain 1 of 1, from 293 to 360: score 69.2, E = 3.1e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+ ++sHELRTPLt+I+g ae+ l+ ++++ e+ l
CP002026_1 293 ARRRFFTDVSHELRTPLTVILGEAEITLR---------PAQPREEDL 330

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +l ti++ a+rl r ++dlL ++r e+g
CP002026_1 331 ----------RAALLTIQSRARRLHRRVEDLLRIARSESG 360

CP002026_0297: domain 1 of 1, from 607 to 675: score 68.0, E = 6.6e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks f++++s ELR PLt+I+g+a+lL + g ++l+ +q
CP002026_0 607 LKSTFVSHVSYELRSPLTTIIGFAQLLDD------TGIGPLNVKQ-- 645

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r y++ i +++ ll++ind+Ldl+ i+ag
CP002026_0 646 ----------RAYVNHITESSAALLAIINDILDLATIDAG 675

CP002026_1160: domain 1 of 1, from 660 to 727: score 65.9, E = 2.8e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++a++sHELR+PL +++ + +L++ ++ ++ ++
CP002026_1 660 AIGQLTATVSHELRNPLGTLMSSVAVLKR--------TGKFDSHDV- 697

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +++i+r ++r+ r+i+dlL++sr +
CP002026_1 698 ----------HDEIDRIQRNVRRCVRIIEDLLEFSRRPNV 727

CP002026_4305: domain 1 of 1, from 368 to 433: score 65.2, E = 4.3e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + f+a++sHEL++PLt++r ++e+L ++++ r
CP002026_4 368 AIESFAADVSHELKNPLTSLRSAVETLPL----------AKTDSSR- 403

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ e+i+++++rl+rLi d+ d sr++a+
CP002026_4 404 ----------GRLMEVIQHDVKRLDRLITDISDASRLDAE 433

CP002026_1751: domain 1 of 1, from 142 to 206: score 55.1, E = 3.1e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++++l+HE+++PL++Irg+a+lL+ +s+++
CP002026_1 142 SVTALASMLAHEIKNPLSGIRGAAQLLEL----------SASDDD-- 176

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +++ i +ea+r+ +L++++ +s +
CP002026_1 177 ----------RSLTRLITDEADRIVKLVDRMEVFSDERPI 206

CP002026_1221: domain 1 of 1, from 231 to 296: score 54.5, E = 4.4e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +a ++HELRTPL+++++ a+++l+ + +
CP002026_1 231 HERDITAFAAHELRTPLAGLKTQAQVALA---------AGETNLR-- 266

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l+ i+ +++r rL+++lL l+r++ag
CP002026_1 267 ----------ENALRQIIVSVDRTTRLVRQLLALARLDAG 296

CP002026_0081: domain 1 of 1, from 825 to 890: score 51.1, E = 4.1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fla++sH++ +PL+a r+ya L e e+
CP002026_0 825 SKTRFLAAASHDILQPLNAARLYATSLVE---------RSVAGEE-- 860

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + ++ ++e ++++ lLd+sr++ag
CP002026_0 861 ----------TRLARNVDASLEAVEEILAALLDISRLDAG 890

CP002026_1749: domain 1 of 1, from 489 to 560: score 47.8, E = 3.5e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++ ++HE+++PLt I++ ae L++++ ++ e++ e
CP002026_1 489 AWADVARRIAHEIKNPLTPIQLSAERLRRRY----GKVIEADREV-- 529

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +eti+r++ + r+++++ ++r+ +
CP002026_1 530 ---------FDQCTETIIRQVGDIGRMVDEFSSFARMPKP 560

CP002026_3689: domain 1 of 1, from 254 to 324: score 45.6, E = 1.5e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++a+++HE+++PL+a+ ++ e+ l++l g++e + ++
CP002026_3 254 TMGELTASIAHEINQPLAAVVTNGEAGLRWL-----GRPEPDIAEV- 294

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +e+++ ++r ++ + +l+ l+r +++
CP002026_3 295 ----------KASVERMIANGRRASEVVARLRALARRGEP 324

CP002026_0088: domain 1 of 1, from 157 to 227: score 45.3, E = 1.9e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e+ a+++HEL++PLta+++y++++++ a+ + ++
CP002026_0 157 AIDEMGAAIAHELNQPLTALMLYLQAIRR------AHAKGVDIVKV- 196

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e+l+++ eaer ++i++++++ +++
CP002026_0 197 ---------VGEILDKAAGEAERAGHIIQRMRQFVEKREP 227

CP002026_0730: domain 1 of 1, from 237 to 303: score 45.2, E = 2e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ e n++H+L+TPLt +r ae +l+ t++++eq
CP002026_0 237 GLKEVSDNIAHDLKTPLTRLRNRAEDALR---------TAQGDEQ-- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+r ++e ++e+++l r + lL ++r+eag
CP002026_0 273 ---------WRTATEQTIEESDSLIRTFDALLMIARAEAG 303

CP002026_4046: domain 1 of 1, from 404 to 474: score 43.7, E = 5.1e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++a+++HE ++PLtaI a + ++l +++ + e++
CP002026_4 404 VLGELTASIAHEVNQPLTAIASSAAAGVRWL-----RRPVPNIEEV- 444

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+ e+i ++a+r ++i +++ ++ a+
CP002026_4 445 ----------RELAESIVSDAQRAGEIIARIRSMAARKAP 474

CP002026_2211: domain 1 of 1, from 460 to 526: score 42.8, E = 9.3e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ LtaI+gy++lLl++ + +++
CP002026_2 460 AVGQLAGGVAHDFNNVLTAIIGYSDLLLAN--------SRPTDPS-- 496

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + i++ a+r L+++lL +sr ++
CP002026_2 497 ----------FQDVMQIKQNANRAAGLVRQLLAFSRRQTL 526

CP002026_2562: domain 1 of 1, from 386 to 452: score 42.0, E = 1.6e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ L++++g++el+ + + s++ +
CP002026_2 386 AVGQLTGGIAHDFNNLLAVVLGNLELAAK---------RAPSDPRL- 422

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l ++++a+r +L +++L ++r +
CP002026_2 423 ----------QALLGNAIQAAQRGAALTQRMLAFARRQDL 452

CP002026_0558: domain 1 of 1, from 241 to 299: score 41.0, E = 3e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++f+ +++HELRTP++++++ +++L e
CP002026_0 241 VERRFTTDAAHELRTPVAVLMARIDMLPE------------------ 269

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e++ ++ rl+r +++lL+ +r++a
CP002026_0 270 ----------GPAKESLVLDTARLSRSVSQLLQVARLDAK 299

CP002026_3129: domain 1 of 1, from 245 to 302: score 40.6, E = 4.1e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+ f+++++HE+RTPL++Ir+ +e +
CP002026_3 245 AQKLFTSAIAHEIRTPLAVIRLELER-ID------------------ 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +++ e++ l + +++l +l+r+ea
CP002026_3 273 ----------HPAAQRATGELDELGHFVEQLVTLARLEAS 302

CP002026_1287: domain 1 of 1, from 525 to 595: score 38.8, E = 1.3e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++a+++HE+++PL+aI ++ e+ l++ld + ++ +
CP002026_1 525 TLGQLTASIAHEINQPLAAIATHGEAGLRWLD------NATPDLD-- 563

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+r+ ++ ++ a+r ++++ +++ ++ +++
CP002026_1 564 --------EVRKSTRQVIANAHRASDIVGRIRAMAVRREQ 595

CP002026_2416: domain 1 of 1, from 257 to 315: score 38.2, E = 1.9e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +la++sH++RT Lt ++ + l+ +
CP002026_2 257 QRTTMLAGVSHDMRTILTRFKLELALIGD------------------ 285

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e ++++++ l+++++ L ++r ++g
CP002026_2 286 ----------TPDTEALRKDVDELQSMLEAYLAFARDDTG 315

CP002026_1154: domain 1 of 1, from 228 to 293: score 36.8, E = 4.7e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++an +HELR+PL++ ++ a+ +++ e +e+++
CP002026_1 228 AERSLAANTAHELRNPLAGAIAQAQRIQK----------ETGEPHV- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ i+ ++rl + ++l++l+r+e g
CP002026_1 264 ----------ARRGAHIEATLKRLTARAERLMQLARAEGG 293

CP002026_1954: domain 1 of 1, from 494 to 561: score 35.5, E = 1.1e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++ +++H++++ Lt+I+g+++l+l ++ q+
CP002026_1 494 AVGNLTGGIAHDFNNLLTTIIGNLDLALI--------KSTEACVQQ- 531

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r yl+t+ r++ r ++L lL ++r +
CP002026_1 532 ----------RPYLDTAMRASLRGSELAKKLLAFARKQPL 561

CP002026_4229: domain 2 of 2, from 428 to 496: score 33.9, E = 3.2e-09
*->akseflanlsHELRTPLtaIrgyae...lLleeldkvlagdtelsee
a+++++a++ HEL++PL+aIr +a++ ++Ll +++e
CP002026_4 428 ALGQMAAGIGHELNQPLAAIRSHAHnatVLLS---------RSRPAE 465

qrlpeLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l +i++ + r+ + i+ l ++r ++
CP002026_4 466 A------------AESLGRIESLTARMAQSISHLKRFARRPEP 496

CP002026_3982: domain 1 of 1, from 213 to 279: score 33.6, E = 3.8e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ ++a+++HEL TPL++I a+ L + + + +++
CP002026_3 213 ALDGLAAAAAHELGTPLATITVVAKELVR--------SLPPDSPV-- 249

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e ++ + ++aer++++++ l l +a+
CP002026_3 250 ----------GEDIRLVSEQAERCRAILRTLTSLGAGDAP 279

CP002026_2370: domain 1 of 1, from 408 to 475: score 32.3, E = 8.8e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ L++I+ ++l ++ + ++e ++
CP002026_2 408 AIGQLTGGIAHDFNNMLAVILSGLHLVKR--------RLQRGEGKL- 445

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++ +++ ++r +L +lL +sr +a
CP002026_2 446 ----------EPLIDAAIDGGDRAVQLTGRLLAFSRRQAL 475

CP002026_1267: domain 1 of 1, from 263 to 329: score 29.7, E = 4.8e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++++l+HE+++PL +I ++ +L+ + e r
CP002026_1 263 SLGRLASALAHEINNPLGGIFNALATLKS---------HGHLESVR- 299

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ ++r + +++ ++ L l r +
CP002026_1 300 ----------AGSIDLVERGLVGIRDVVRSTLALHRTDGS 329


Histogram of all scores:
score obs exp (one = represents 16 sequences)
----- --- ---
-15 1 0|=
-14 10 0|=
-13 38 3|*==
-12 199 101|======*======
-11 376 525|======================== *
-10 728 974|============================================== *
-9 901 1006|========================================================= *
-8 785 753|===============================================*==
-7 592 474|=============================*=======
-6 347 273|=================*====
-5 185 149|=========*==
-4 98 80|====*==
-3 72 42|==*==
-2 27 22|=*
-1 13 11|*
0 11 6|*
1 5 3|*
2 2 1|*
3 2 0|=
4 0 0|
5 0 0|
> 6 39 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 298.2755
P(chi-square) = 0

Total sequences searched: 4431

Whole sequence top hits:
tophits_s report:
Total hits: 31
Satisfying E cutoff: 31
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 31
Satisfying E cutoff: 31
Total memory: 33K


Acknowledgements:

This research is funded by:

Developed by: