Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
132 projects found  

1 accessions found for Starkeya novella DSM 506  

Data for CP002026  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP002026.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP002026_0781 CDS_815101-816153 106.8 3.6e-30 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP002026_0781 1/1 148 233 .. 1 94 [] 106.8 3.6e-30

Alignments of top-scoring domains:
CP002026_0781: domain 1 of 1, from 148 to 233: score 106.8, E = 3.6e-30
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
E++HRV N+LQ+I+S L+ ar++++ee+ + +L+ +++RV+S
CP002026_0 148 EVQHRVANSLQIIASVLMQSARRVQSEEA-----RGHLHNAHHRVMS 189

mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
+A+++++L++s + ++v+++ Yl+ L+ +L s+ + d++s++ +
CP002026_0 190 IATVQRHLSTSAG-GNVELRTYLTQLCQSLGASMISDPDRLSIE--V 233


Histogram of all scores:
score obs exp (one = represents 22 sequences)
----- --- ---
-15 17 0|=
-14 28 0|==
-13 94 27|=*===
-12 257 291|============ *
-11 1263 810|====================================*=====================
-10 971 1048|============================================= *
-9 716 885|================================= *
-8 501 594|======================= *
-7 249 352|============ *
-6 191 196|========*
-5 63 105|=== *
-4 40 56|==*
-3 19 29|=*
-2 10 15|*
-1 5 8|*
0 3 4|*
1 0 2|*
2 1 1|*
3 1 0|=
> 4 2 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 527.3486
P(chi-square) = 0

Total sequences searched: 4431

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: