Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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132 projects found  

1 accessions found for Starkeya novella DSM 506  

Data for CP002026  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP002026.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP002026_1235 CDS_1300389-1299013 44.7 7.7e-13 1
CP002026_4118 CDS_4424445-4423018 32.6 2.7e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP002026_1235 1/1 250 313 .. 1 70 [] 44.7 7.7e-13
CP002026_4118 1/1 257 328 .. 1 70 [] 32.6 2.7e-09

Alignments of top-scoring domains:
CP002026_1235: domain 1 of 1, from 250 to 313: score 44.7, E = 7.7e-13
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+ +ARELHD+ gQ L+a + + ++++ + +++ +i
CP002026_1 250 ERRALARELHDEFGQCLTATRALAAAVAQSG--E----STAQEGVRI 290

relarealaevRrllgdLRpaal<-*
+e++ + ++ +R+ l++LRp++l
CP002026_1 291 AEISGQMMDSLRAELSRLRPPDL 313

CP002026_4118: domain 1 of 1, from 257 to 328: score 32.6, E = 2.7e-09
*->ERaRIARELHDsvgQsLsaiklqlelarrllds...dkdpeeareal
ER+ IA +LHD++g ++++ le + rl + +++ ++++ e+
CP002026_4 257 ERRQIASDLHDELGPCVFGLRANLESVDRLS-ArvePDLAQRLGERT 302

deirelarealaevRrllgdLRpaal<-*
+++ e++++ + Rrll+ +Rp+al
CP002026_4 303 ATMVEILDRIQGLNRRLLRKIRPMAL 328


Histogram of all scores:
score obs exp (one = represents 13 sequences)
----- --- ---
-14 8 0|=
-13 39 0|===
-12 74 49|===*==
-11 133 406|=========== *
-10 512 942|======================================== *
-9 765 1070|==========================================================*
-8 659 824|=================================================== *
-7 628 518|=======================================*=========
-6 510 293|======================*=================
-5 473 157|============*========================
-4 245 82|======*============
-3 147 42|===*========
-2 90 21|=*=====
-1 49 10|*===
0 36 5|*==
1 32 2|*==
2 10 1|*
3 4 0|=
4 5 0|=
5 3 0|=
6 3 0|=
7 2 0|=
> 8 4 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 2424.4902
P(chi-square) = 0

Total sequences searched: 4431

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: