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Classification of phyla is from NCBI page
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2 accessions found for Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  

Data for CP002040  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP002040.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP002040_3689 CDS_4497568-4495751 75.4 6e-21 1
CP002040_4723 CDS_5679256-5680860 73.6 1.9e-20 1
CP002040_0296 CDS_375786-373234 71.6 7.1e-20 1
CP002040_4257 CDS_5154796-5155971 70.9 1.1e-19 1
CP002040_2753 CDS_3337179-3335752 67.8 8.3e-19 1
CP002040_1797 CDS_2229537-2228071 66.8 1.6e-18 1
CP002040_1608 CDS_2003841-2001307 61.2 6.4e-17 1
CP002040_1490 CDS_1854728-1857226 58.9 2.8e-16 1
CP002040_4714 CDS_5671356-5670142 55.9 2e-15 1
CP002040_4604 CDS_5547022-5549193 54.0 6.8e-15 1
CP002040_0437 CDS_535672-537597 46.1 1.2e-12 1
CP002040_4448 CDS_5352947-5351562 46.0 1.2e-12 1
CP002040_2842 CDS_3444584-3443334 45.0 2.4e-12 1
CP002040_3791 CDS_4615200-4616486 43.5 6.6e-12 1
CP002040_4484 CDS_5391966-5393339 41.3 2.7e-11 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP002040_3689 1/1 313 380 .. 1 87 [] 75.4 6e-21
CP002040_4723 1/1 316 379 .. 1 87 [] 73.6 1.9e-20
CP002040_0296 1/1 613 681 .. 1 87 [] 71.6 7.1e-20
CP002040_4257 1/1 151 217 .. 1 87 [] 70.9 1.1e-19
CP002040_2753 1/1 242 309 .. 1 87 [] 67.8 8.3e-19
CP002040_1797 1/1 248 319 .. 1 87 [] 66.8 1.6e-18
CP002040_1608 1/1 621 689 .. 1 87 [] 61.2 6.4e-17
CP002040_1490 1/1 604 672 .. 1 87 [] 58.9 2.8e-16
CP002040_4714 1/1 184 250 .. 1 87 [] 55.9 2e-15
CP002040_4604 1/1 484 548 .. 1 87 [] 54.0 6.8e-15
CP002040_0437 1/1 324 392 .. 1 87 [] 46.1 1.2e-12
CP002040_4448 1/1 243 308 .. 1 87 [] 46.0 1.2e-12
CP002040_2842 1/1 189 255 .. 1 87 [] 45.0 2.4e-12
CP002040_3791 1/1 209 275 .. 1 87 [] 43.5 6.6e-12
CP002040_4484 1/1 248 305 .. 1 87 [] 41.3 2.7e-11

Alignments of top-scoring domains:
CP002040_3689: domain 1 of 1, from 313 to 380: score 75.4, E = 6e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f++++sHELRTPLt+I+++ ++L + +++el++
CP002040_3 313 LQRQFVSDVSHELRTPLTTIKMAGDVLFD-------EREELDPTM-- 350

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ +e +++++er ++L++dlL++sr +ag
CP002040_3 351 ----------RRSVELLQSQVERFEELLSDLLEISRHDAG 380

CP002040_4723: domain 1 of 1, from 316 to 379: score 73.6, E = 1.9e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+ ++ HELRTP+t +rg++el+ + ++e+r
CP002040_4 316 AQRQFVDDAGHELRTPITIVRGHLELMGD------------DPEER- 349

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re l+ + +e++r++r+++dlL l++++++
CP002040_4 350 ----------REVLRLVTDELDRMSRIVEDLLLLAKAQQP 379

CP002040_0296: domain 1 of 1, from 613 to 681: score 71.6, E = 7.1e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la++sH+LRTPLt+I++ ++ L++ d +l+ee+r
CP002040_0 613 IRTALLAAVSHDLRTPLTSIKASLSSLRA-------TDITLTEEDR- 651

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++let++++++rl+rLi++lLd+sr +
CP002040_0 652 ----------EDLLETVEESTDRLNRLIDNLLDMSRVHTD 681

CP002040_4257: domain 1 of 1, from 151 to 217: score 70.9, E = 1.1e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHEL+TP+ a++++ae+ ++ + ++e +
CP002040_4 151 VRRDFVANISHELKTPVGALSLLAETVQD---------ASDDPEAV- 187

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+++e+++ ea rl + i+dl +lsri+
CP002040_4 188 ----------RRFTERMQIEASRLTAVIQDLITLSRIQGA 217

CP002040_2753: domain 1 of 1, from 242 to 309: score 67.8, E = 8.3e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f++++sHELR+P++++r+ +e+ l d++ ++ r
CP002040_2 242 RQRRFVSDASHELRNPIAGMRTKLEVELS--------DPDPDARAR- 279

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l +l+++erl++++ dlL+l+r++ag
CP002040_2 280 ----------ERLLTGLLSDTERLENIVTDLLELARLDAG 309

CP002040_1797: domain 1 of 1, from 248 to 319: score 66.8, E = 1.6e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++f+a++sHELRTPL++Irg+ael +
CP002040_1 248 TTRRFVADASHELRTPLSSIRGFAELYRQ------------------ 276

peLR.l..edpeyreyletilreaerllrLindlLdlsrieag<-*
+++R+l ed + ++i++ea r+ +++dlL+lsr+++
CP002040_1 277 GRGRgLvaEDARADRWMSRIEDEAGRMGGMVDDLLTLSRLDEA 319

CP002040_1608: domain 1 of 1, from 621 to 689: score 61.2, E = 6.4e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +la++sH+LR PL++ ++ + L+ ++ see +
CP002040_1 621 MRTALLAAVSHDLRAPLASAKASVTSLRS-------REVRFSEEVQ- 659

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l t++++++rl rL+ dlLd+sr++ag
CP002040_1 660 ----------AELLATADESLDRLTRLVTDLLDMSRLQAG 689

CP002040_1490: domain 1 of 1, from 604 to 672: score 58.9, E = 2.8e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s +l+++sH+LR PL+a+ ++++ L+ + ++s+ +r
CP002040_1 604 VRSALLSAVSHDLRRPLAAVTTAVSSLRLSG-------VDWSPGDR- 642

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+l t+++++ l +L+ dlLd sr++ag
CP002040_1 643 ----------DELLATAEESLATLTALVTDLLDVSRLQAG 672

CP002040_4714: domain 1 of 1, from 184 to 250: score 55.9, E = 2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+an+sHELRTPL++ ++++e+ l + +e+
CP002040_4 184 AQRRFVANASHELRTPLAVQKAAVEVPLS--------QGRVPEDL-- 220

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r ++ ++l++++r + Li lL l+r + g
CP002040_4 221 ----------RPAFTRVLDSVDRSELLIAGLLLLARSDRG 250

CP002040_4604: domain 1 of 1, from 484 to 548: score 54.0, E = 6.8e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +++++sHELRTPL+ +rg +e++++++ ++l+ e +
CP002040_4 484 QRRAMVSDVSHELRTPLSNLRGWLEAAQDGV-------ADLDRERM- 522

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e+ l+++++dl dl+ ++ag
CP002040_4 523 --------------GMLVGETLLLQDIVDDLQDLALADAG 548

CP002040_0437: domain 1 of 1, from 324 to 392: score 46.1, E = 1.2e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ +sH+L PL + +++lL++++ + l+e
CP002040_0 324 ELEQFAYVASHDLQEPLRKVASFCQLLQRRYQ------GQLDERA-- 362

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y++ + + a+r++ LindlL +sr +
CP002040_0 363 ----------DAYIDFAVEGAKRMQTLINDLLAFSRVGRV 392

CP002040_4448: domain 1 of 1, from 243 to 308: score 46.0, E = 1.2e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f++++sH+LR+PL+++r+++e L +l see
CP002040_4 243 RQRSFVSDASHQLRNPLASLRLAVENLAPYL---------GSEEA-- 278

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+ ++ +e+ + r++n lL +r+e+
CP002040_4 279 ----------REAHAVAVDETTFMHRMLNSLLAATRLESV 308

CP002040_2842: domain 1 of 1, from 189 to 255: score 45.0, E = 2.4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHELRTPL+ r+++e++l ++ s++
CP002040_2 189 GQRRFVANASHELRTPLAINRTLLEVALS--------APDVSADL-- 225

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +t+l+ r +rLi+ lL l++ + +
CP002040_2 226 ----------KSVGQTLLETNARHERLIEGLLLLAKSDRE 255

CP002040_3791: domain 1 of 1, from 209 to 275: score 43.5, E = 6.6e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ f+ ++sH+LRTPLta+ + +e +l+ ++ ++e +
CP002040_3 209 TERHFATDASHQLRTPLTALTMRLEEILA---------EADNPEVV- 245

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re e +l ++erl + ++ lL +r ++
CP002040_3 246 ----------REEGEAALAQTERLVETVESLLGRARKSQN 275

CP002040_4484: domain 1 of 1, from 248 to 305: score 41.3, E = 2.7e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ la++sHE RTPL++ g++elL + +e
CP002040_4 248 NRRRYLAAISHEVRTPLSVAEGHLELLGT-------------AEA-- 279

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ e+ rl+r ++dl+ +r + +
CP002040_4 280 --------------AVVRAELGRLRRVLEDLMAVARGGDE 305


Histogram of all scores:
score obs exp (one = represents 16 sequences)
----- --- ---
-15 1 0|=
-14 10 0|=
-13 42 3|*==
-12 158 109|======*===
-11 415 568|========================== *
-10 810 1055|=================================================== *
-9 941 1089|==========================================================*
-8 869 815|==================================================*====
-7 604 514|================================*=====
-6 410 295|==================*=======
-5 249 162|==========*=====
-4 125 86|=====*==
-3 71 45|==*==
-2 36 24|=*=
-1 12 12|*
0 11 6|*
1 13 3|*
2 1 1|*
3 0 0|
4 2 0|=
5 2 0|=
6 0 0|
7 0 0|
> 8 16 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 288.9966
P(chi-square) = 0

Total sequences searched: 4798

Whole sequence top hits:
tophits_s report:
Total hits: 15
Satisfying E cutoff: 15
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 15
Satisfying E cutoff: 15
Total memory: 26K


Acknowledgements:

This research is funded by:

Developed by: