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Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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2 accessions found for Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  

Data for CP002040  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP002040.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP002040_3641 CDS_4434970-4433426 108.3 1.5e-30 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP002040_3641 1/1 307 387 .. 1 94 [] 108.3 1.5e-30

Alignments of top-scoring domains:
CP002040_3641: domain 1 of 1, from 307 to 387: score 108.3, E = 1.5e-30
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
EIHHRVKNNLQ++++LLrLQar+ + +e+ ++aL E+++RV S
CP002040_3 307 EIHHRVKNNLQTVAALLRLQARRLDVPEA-----RAALDEAVGRVGS 348

mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
+A++HE+L+ + d + vdf++ ++++ + + g +
CP002040_3 349 IAIVHEMLSHTPD-EVVDFDDIADRVIQMAAEVSSTGTA-------V 387


Histogram of all scores:
score obs exp (one = represents 23 sequences)
----- --- ---
-15 9 0|=
-14 36 0|==
-13 103 30|=*===
-12 302 315|=============*
-11 1327 877|======================================*===================
-10 1064 1135|=============================================== *
-9 730 959|================================ *
-8 623 643|===========================*
-7 259 382|============ *
-6 183 212|======== *
-5 77 114|====*
-4 36 60|==*
-3 20 31|=*
-2 12 16|*
-1 5 8|*
0 5 4|*
1 4 2|*
2 1 1|*
> 3 2 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 541.4284
P(chi-square) = 0

Total sequences searched: 4798

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: