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Classification of phyla is from NCBI page
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Data for CP002041  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP002041.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP002041_0331 CDS_349257-353693 85.1 1.5e-24 1
CP002041_0326 CDS_340507-341982 55.0 5.3e-16 1
CP002041_0394 CDS_429716-431701 48.8 2.9e-14 1
CP002041_0075 CDS_81869-80733 37.2 5.9e-11 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP002041_0331 1/1 953 1021 .. 1 87 [] 85.1 1.5e-24
CP002041_0326 1/1 267 334 .. 1 87 [] 55.0 5.3e-16
CP002041_0394 1/1 391 459 .. 1 87 [] 48.8 2.9e-14
CP002041_0075 1/1 151 216 .. 1 87 [] 37.2 5.9e-11

Alignments of top-scoring domains:
CP002041_0331: domain 1 of 1, from 953 to 1021: score 85.1, E = 1.5e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++ +a lL ++++ ++ls++q
CP002041_0 953 YKSEFLANMSHELRTPLNSLLILARLLADNAE------QNLSAKQ-- 991

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ +ti++++ ll Li+++Ldls+ eag
CP002041_0 992 ----------VEFAQTIHKAGSDLLLLIDEILDLSKVEAG 1021

CP002041_0326: domain 1 of 1, from 267 to 334: score 55.0, E = 5.3e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++ +++HELRTPLt++ +++++L + + ls+e r
CP002041_0 267 EQRRLVQDAAHELRTPLTSLYTNVQVLDR--------VDRLSPEAR- 304

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++e ++ e++ l +L+n+l l+ +++
CP002041_0 305 ----------AGLIEDLRGETRELTALVNELVGLATGDHE 334

CP002041_0394: domain 1 of 1, from 391 to 459: score 48.8, E = 2.9e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++efla+ HELRTP+t+I gya +Ll+ +++ ls++ +
CP002041_0 391 EREEFLATSGHELRTPITVIHGYATTLLR-------KWSRLSPDSQ- 429

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ ti + + l +L+++l s g
CP002041_0 430 ----------YQAVGTIAERSSALAALVDRLQLGSDVARG 459

CP002041_0075: domain 1 of 1, from 151 to 216: score 37.2, E = 5.9e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHELRTPL++ ++++++++ d+e +
CP002041_0 151 TQERFAANASHELRTPLAVTATLLDVARR--------DPEGQDVP-- 187

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++e++ r +L + lL l+ + a
CP002041_0 188 -----------HLVERLSVTNARAVELTEALLRLADANAV 216


Histogram of all scores:
score obs exp (one = represents 3 sequences)
----- --- ---
-14 4 0|==
-13 8 0|===
-12 43 15|====*==========
-11 63 82|===================== *
-10 122 153|========================================= *
-9 126 158|========================================== *
-8 131 118|=======================================*====
-7 88 74|========================*=====
-6 49 43|==============*==
-5 28 23|=======*==
-4 16 12|===*==
-3 5 6|=*
-2 6 3|*=
-1 3 1|*
0 1 0|=
1 0 0|
2 1 0|=
3 0 0|
4 0 0|
> 5 5 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 70.2151
P(chi-square) = 1.382e-11

Total sequences searched: 699

Whole sequence top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: